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Reciprocal INV/BND breakend handling results in duplicates

Status: Open.

#350 In lgmgeo/AnnotSV;

· darci-giac opened on Aug 7, 2026

Inconsistent number of columns between header and variant records in AnnotSV output

Status: Open.

#348 In lgmgeo/AnnotSV;

· Junyanzhong opened on Aug 5, 2026

Annotating BND events - INV and TRA

Status: Open.

#346 In lgmgeo/AnnotSV;

· vandrioletti-art opened on Jul 13, 2026

Variantconvert installed at runtime even if it was successfully installed during the initial build or a previous run

Status: Open.

#345 In lgmgeo/AnnotSV;

· hkeward opened on Jun 11, 2026

AnnotSV ranking criteria: missing closing paren in 2B (loss) explanation

Status: Open.

#341 In lgmgeo/AnnotSV;

· hkeward opened on Jun 8, 2026

BUG in INSTALL_annotations.sh

Status: Open.

#340 In lgmgeo/AnnotSV;

· Imoteph opened on Jun 8, 2026

List element in quotes followed by ""Kaposis" instead of space

Status: Open.

#338 In lgmgeo/AnnotSV;

· GACGAMA opened on May 21, 2026

Split VCF INFO fields from the -SVinputInfo option

new functionality requested

Status: Open.

#331 In lgmgeo/AnnotSV;

· thomasguignard opened on Apr 17, 2026

PhenoGenius not being installed when using bioconda

bugSomething isn't workingSomething isn't working

Docker/Singularity/Bioconda

HPOExomiser / PhenoGeniusExomiser / PhenoGenius

Status: Open.

#323 In lgmgeo/AnnotSV;

· GACGAMA opened on Mar 6, 2026

Exomiser Network unreachable

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

HPOExomiser / PhenoGeniusExomiser / PhenoGenius

Status: Open.

#306 In lgmgeo/AnnotSV;

· abrusell opened on Nov 10, 2025

Major vs minor Annotations_* difference

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#305 In lgmgeo/AnnotSV;

· Stikus opened on Oct 31, 2025

Invalid VCF according to VCF specification

VariantConvert

vcf output

Status: Open.

#261 In lgmgeo/AnnotSV;

· aligogon opened on Oct 9, 2024