Hello,
I used AnnotSV v3.0.7 to annotate SV against the mm10 and observed a discrepancy in the output file format.
Specifically, the header contains 44 columns, whereas the annotated variant records contain 46 columns. This results in a mismatch between the header and data rows.
It appears that after the columns P_snvindel_nb and P_snvindel_phen, two empty fields are present in the variant records, causing all subsequent columns to shift by two positions relative to the header.
AnnotSV version: 3.0.7
Annotation genome: mm10
Could you please confirm whether this is an issue or caused by incorrect settings? I have attached the AnnotSV output for your reference.
test.sv.annotsv.tsv
Thanks a lot.
Junyan
Hello,
I used AnnotSV v3.0.7 to annotate SV against the mm10 and observed a discrepancy in the output file format.
Specifically, the header contains 44 columns, whereas the annotated variant records contain 46 columns. This results in a mismatch between the header and data rows.
It appears that after the columns P_snvindel_nb and P_snvindel_phen, two empty fields are present in the variant records, causing all subsequent columns to shift by two positions relative to the header.
AnnotSV version: 3.0.7
Annotation genome: mm10
Could you please confirm whether this is an issue or caused by incorrect settings? I have attached the AnnotSV output for your reference.
test.sv.annotsv.tsv
Thanks a lot.
Junyan