host-microbe-crosstalk

Here are 2 public repositories matching this topic...

BaradaChakraborty / Microbiome-Trm-Crosstalk-scRNAseq

scATAC-seq pipeline mapping mucosal immunity and host-microbe crosstalk. Profiles physical chromatin accessibility of Trm cells (Itgae/CD103) and Secretory IgA Plasma cells (Igj) to decode intestinal defense mechanisms.

bioinformatics epigenetics signac single-cell-atac-seq seurat systems-immunology mucosal-immunity tissue-resident-t-cells iga-plasma-cells host-microbe-crosstalk

Updated Apr 3, 2026
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BaradaChakraborty / Manuscript_2_NOD2_Axis

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End-to-end clinical shotgun metagenomic pipeline investigating microbial triggers (NOD2/TLR4) of metabolic inflammation, disproving barrier failure and supporting the Host Autonomy model in Type 2 Diabetes.

systems-biology microbiome computational-immunology r-stats humann type-2-diabetes metagenomics-bioinformatics host-microbe-crosstalk

Updated Apr 25, 2026
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