Refactoring preprocess_data, calculate_entropy and commitment_score - #83

Merged

WWXkenmo merged 10 commits into

theislab:mainfrom

Aug 4, 2026

Commits on Jul 12, 2026

tests: fix and modernize tests/test_markov.py — add missing imports, fix var_names and W handling, ensure obs annotations exist, use MODEL consistently
emmaaer
committed
e7f23ec

Commits on Jul 31, 2026

Merge branch 'theislab:main' into main
emmaaer
authored
bafe040
Update _preprocess_data.py with new parameter return_velo_genes
emmaaer
authored
4364d52
Update _utils.py with new return from entropy calculation
emmaaer
authored
0813a63
Update _commitment_score.py with new score computation
emmaaer
authored
61a8e66
Create _visits_diff_per_tf.py to tools
emmaaer
authored
2b7f693
Update _markov_density_screening.py by visits_diff_per_TF call
emmaaer
authored
2e54953
Remove sig_palette parameter
emmaaer
authored
88124e9
Update _markov_density_screening.py
emmaaer
authored
47ddb0a

Commits on Aug 4, 2026

Document RegVelo workflow using Biomni lab
emmaaer
authored
bc8794e