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Jupyter Notebook 1.2k 277
RNA Velocity generalized through dynamical modeling
Python 506 114
Reference mapping for single-cell genomics
Jupyter Notebook 407 71
Benchmarking analysis of data integration tools
Python 426 76
Electronic Health Record Analysis with Python.
Python 360 50
Multi-omic single-cell optimal transport tools
Python 214 16
Scalable framework for integrating single-cell omics with genetic data using AnnData.
A dashboard of everything in the theislab GitHub repository
Reference implementations and fixture generators for squidpy ports
InterScale: multi-scale cellular interaction analysis model for spatial transcriptomics
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