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Pull requests: openpipelines-bio/openpipeline

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Pull requests list

Bump docker/login-action from 4 to 4.5.2 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#1221 opened Jul 31, 2026 by dependabot Bot Loading…
Bump nf-core/setup-nextflow from 3.0.0 to 3.0.1 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#1220 opened Jul 22, 2026 by dependabot Bot Loading…
update author info
#1219 opened Jul 20, 2026 by dorien-er Contributor Loading…
1 of 10 tasks
Bump actions/setup-python from 6 to 7 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#1218 opened Jul 20, 2026 by dependabot Bot Loading…
Always store details in highly_variable_features_scanpy
#1186 opened May 6, 2026 by lazappi Contributor Loading…
5 of 10 tasks
Store flavor in highly_variable_features_scanpy
#1185 opened May 6, 2026 by lazappi Contributor Loading…
5 of 10 tasks
Support identical fastq filenames for multiple flow cell directories.
#1172 opened Apr 22, 2026 by DriesSchaumont Member Loading…
10 tasks
support for conversion of cellranger filtered h5 to h5mu
#1170 opened Apr 22, 2026 by dorien-er Contributor Loading…
5 of 10 tasks
Add calculate_marker_genes component
#1168 opened Apr 22, 2026 by lazappi Contributor Loading…
5 of 10 tasks
add metadata/copy_modality_slots component
#1166 opened Apr 17, 2026 by jakubmajercik Collaborator Loading…
4 of 10 tasks
add filter/create_cell_masks component
#1165 opened Apr 17, 2026 by jakubmajercik Collaborator Loading…
3 of 10 tasks
Add dataflow/move_anndata_slots component
#1163 opened Apr 14, 2026 by jakubmajercik Collaborator Loading…
4 of 10 tasks
Add BEYOND workflow
#1162 opened Apr 10, 2026 by mdgrv Loading…
5 of 10 tasks
Scanvi model
#1104 opened Nov 27, 2025 by dorien-er Contributor Loading…
4 of 10 tasks
openproblems interoperability POC
#883 opened Sep 20, 2024 by rcannood Contributor Draft
10 tasks
Add atac_marker_peaks component
#879 opened Sep 17, 2024 by VladimirShitov Collaborator Loading…
3 of 10 tasks
3.0.0
Add dsb component
#588 opened Oct 17, 2023 by wxicu Collaborator Draft
5 of 10 tasks
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