Scanvi model - #1104
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DriesSchaumont
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| reference_obs_target: "cell_type", | ||
| reference_var_gene_names: "ensemblid", | ||
| max_epochs: 10, | ||
| obsm_embedding: "X_pca" |
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A new workflow was added (embedding_model/scanvi_model). Could this workflow be used as a subworkflow in this one in case a reference model is not provided? Or is it not applicable?
…1106) * CI: Use GITHUB_TOKEN when building containers with github resources * Use mounts * Add secret during build * Undo some changes * Remove a docker_run_args config value * Remove some more docker_run_args
* Bump anndata and mudata [ci force] * Fix multi_star * Allow install as root for some python packages * Fix leftover merge conflict * Add CHANGELOG entry * freebayes: use debian instead of ubuntu * Remove cellbender and update from_seurat_to_h5mu * Fix some builds [ci force]
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