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build: release 2026.6.9 (+ fix CITATION pre-commit hook portability) #74

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Merged
nextgenusfs merged 2 commits into from
Jun 10, 2026
+16 −12
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build: release 2026.6.9 (+ fix CITATION pre-commit hook portability) #74

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b3aa85f
fix(hooks): make pre-commit CITATION sync portable
Jun 10, 2026
a49c009
build: bump version to 2026.6.9
Jun 10, 2026
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22 changes: 13 additions & 9 deletions .githooks/pre-commit
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Original file line number Diff line number Diff line change
Expand Up @@ -3,21 +3,25 @@

# Check if pyproject.toml is being modified
if git diff --cached --name-only | grep -q "pyproject.toml"; then
# Extract the version from pyproject.toml
VERSION=$(grep -E 'version\s*=\s*"[^"]+"' pyproject.toml | head -1 | sed -E 's/.*version\s*=\s*"([^"]+)".*/\1/')

# Extract the version from pyproject.toml.
# Use [[:space:]] instead of \s so the regex works on both GNU and BSD
# (macOS) grep/sed — BSD treats \s as a literal 's', which silently
# falls back to capturing the whole line and corrupts CITATION.cff.
VERSION=$(grep -E '^[[:space:]]*version[[:space:]]*=[[:space:]]*"[^"]+"' pyproject.toml | head -1 | sed -E 's/.*version[[:space:]]*=[[:space:]]*"([^"]+)".*/\1/')

if [ -n "$VERSION" ]; then
# Get current date in YYYY-MM-DD format
TODAY=$(date +"%Y-%m-%d")

# Update version and date in CITATION.cff
sed -i.bak -E "s/version: .*/version: $VERSION/" CITATION.cff
sed -i.bak -E "s/date-released: .*/date-released: '$TODAY'/" CITATION.cff

# Update version and date in CITATION.cff. Anchor with ^ so the
# `version:` rule does not also clobber the `cff-version:` line.
sed -i.bak -E "s/^version: .*/version: $VERSION/" CITATION.cff
sed -i.bak -E "s/^date-released: .*/date-released: '$TODAY'/" CITATION.cff
rm CITATION.cff.bak

# Add the updated CITATION.cff to the commit
git add CITATION.cff

echo "Updated CITATION.cff to version $VERSION and date $TODAY"
fi
fi
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4 changes: 2 additions & 2 deletions CITATION.cff
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Expand Up @@ -17,5 +17,5 @@ keywords:
- functional annotation
- consensus gene models
license: BSD-2-Clause
version: 26.5.22
date-released: '2026-05-24'
version: 2026.6.9
date-released: '2026-06-09'
2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -4,7 +4,7 @@ build-backend = "hatchling.build"

[project]
name = "funannotate2"
version = "26.5.22"
version = "2026.6.9"
description = "Funannotate2: eukarytoic genome annotation pipeline"
readme = {file = "README.md", content-type = "text/markdown"}
authors = [
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