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Genemark run failed: '_io.TextIOWrapper' object has no attribute 'splitlines'

Status: Open.

#61 In nextgenusfs/funannotate2;

· user0380 opened on May 18, 2026

Problem on finding best augustus species

Status: Open.

#60 In nextgenusfs/funannotate2;

· 444thLiao opened on May 7, 2026

Bug with pyfastx in f2 train [with solution]

Status: Open.

#59 In nextgenusfs/funannotate2;

· edwhisnant opened on Apr 28, 2026

Augustus CMD ERROR during f2 predict

Status: Open.

#54 In nextgenusfs/funannotate2;

· edwhisnant opened on Apr 21, 2026

Potential bug in tmp directory cleanup

Status: Open.

#49 In nextgenusfs/funannotate2;

· edwhisnant opened on Apr 2, 2026

diploid assemblies, how do we annotate?

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#47 In nextgenusfs/funannotate2;

· nextgenusfs opened on Mar 19, 2026

ERROR in parsing gene gapmm2_4

Status: Open.

#44 In nextgenusfs/funannotate2;

· Iruj-04 opened on Mar 3, 2026

Separate genes are merging as single gene with long intron

Status: Open.

#43 In nextgenusfs/funannotate2;

· drew-olson-tmru opened on Feb 22, 2026

problem installing funannotate 26.02.12

Status: Open.

#42 In nextgenusfs/funannotate2;

· patmsim opened on Feb 19, 2026

ERROR in train module :

Status: Open.

#41 In nextgenusfs/funannotate2;

· patmsim opened on Feb 13, 2026

IndexError: list index out of range

Status: Open.

#38 In nextgenusfs/funannotate2;

· labpro1-commits opened on Feb 11, 2026

Request for feature

Status: Open.

#36 In nextgenusfs/funannotate2;

· rohitlb-1999 opened on Dec 17, 2025