Merge AsNowcast and indicator and model selection updates#18

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rpwildermuth-NOAA merged 21 commits into

mainfrom

Jan 7, 2026

Commits on Jan 16, 2025

feat(DFA): begin initial DFA recalibration
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Commits on Feb 5, 2025

Commits on Feb 20, 2025

feat(DFAupdate): Code to update data for the DFA
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chore(updateDev): merge updates from 'main' for local development
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Commits on Feb 25, 2025

feat(2025resSA): adapted research assessment to reflect 2024 benchmark and updated data.
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feat(2025resSA): updated SS files for functioning 2025 research assessment
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Commits on Mar 17, 2025

feat(2025RAMupdate): testing model update modifications for research assessment
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Commits on Mar 19, 2025

feat(2025RAMupdate): final model formulations for new blocking and mortality tests.
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Commits on Mar 27, 2025

feat(DfAupdate): updates to sardine research SS model and DFA dataset and model selection.
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Commits on Apr 29, 2025

chore(mergefix): merge update from main to rpwDev
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Commits on May 5, 2025

feat(reFcast): Compare performance of retrospective forecast of As-Forecast model to benchmark assessment
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Commits on May 6, 2025

feat(nowcast): Model setup for alternative forecast using blend of as-data methods for last assessment years.
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Commits on Jun 11, 2025

feat(GAMindex): code to evaluate a GAM used as an index of recruitment
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Commits on Aug 22, 2025

feat(indicators): Add thresher shark gut content and weight-length resid indicators
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Commits on Sep 18, 2025

Commits on Oct 1, 2025

feat(inxSelect): Preliminary indicator selection and DFA and GAM model fitting.
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Commits on Jan 6, 2026

feat(modelSelect): indicator and model selection output for DFA and GAM structures.
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Commits on Jan 7, 2026

chore(cleanAsNowcast): delete scenarioModels/benchmarkDFA_AsNowcast/plots directory
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