Merge AsNowcast and indicator and model selection updates#18
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Refit DFA model using sardine-specific indicators and evaluate model performance.
Merge branch 'main' into rpwDev # Please enter a commit message to explain why this merge is necessary, # especially if it merges an updated upstream into a topic branch. # # Lines starting with '#' will be ignored, and an empty message aborts # the commit.
…k and updated data. Includes partial conversion of control.ss file to reflect selectivity parameter changes, but further troubleshooting needed.
…rtality tests. Also includes changes to remove growth estimation and time-varying growth parameters.
… and model selection. Inlcudes tests of research model parameterizations and new code to calculate out-of-sample predictive performance at multiple time horizons.
…recast model to benchmark assessment
…-data methods for last assessment years.
Also creates code to do LFOXV for the GAM products and corrects an error in the LFOXV for the DFA model selection.
… common thresher shark gut contents time series.
…l fitting. Includes updated indicator time series, indicator selection, and preliminary application of one indicator set to DFA and GAM model selection.
…lots directory remove plots directory in benchmarkDFA_AsNowcast model folder to clean up development merge to main.
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Merge development of AsNowcast SS model structure and selection of indicators, recruitment index models, and related diagnostics. |
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Merge AsNowcast SS model structure and indicator and model selection updates from RPW dev branch to main.