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6 changes: 6 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,12 @@ The original repository activity seems quite low, and unfortunately, the bugs ha
since anndata has no nullable-string encoding) instead of the text `"NaN"`.
- `WriteH5AD` now errors on an unknown `assay` instead of silently writing
a different one.
- Reductions whose names contain non-alphanumeric characters (`umap_harmony`,
`pca_uncorrected`, `mrVI_umap`, ...) are no longer dropped from `obsm`.
Seurat strips those characters when it derives a reduction key
(`umap_harmony` -> `umapharmony_`), which previously made such reductions
fail the assay-matching check and be skipped silently. A reduction that is
still not matched now raises a warning instead of disappearing.
Comment on lines +32 to +37


## Installation
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