Update bwa_mem2_mem --index argument - #223
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July 21, 2026 08:34
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Description
Update the
--indexargument of thebwa_mem2_memcomponent so that it expects a directory rather than a file. The index contains several file and if only one is provided then the others are not staged when using the Nextflow runner.Checklist before requesting a review
I have performed a self-review of my code
Conforms to the Contributing guidelines
Proposed changes are described in the CHANGELOG.md
I have tested my code with
viash ns test --parallel -q <name or namespace>Check the correct box. Does this PR contain: