Code and reproducibility materials for “Phage-antibiotic therapy under density-dependent bacterial defense,” including ODE simulations, equilibrium/stability analysis, bifurcation diagrams, and figure generation scripts.

End-to-end bacteriophage genome characterisation and phage-therapy screening — a one-click macOS app.

Genomic analysis of bacterial defence systems in Acinetobacter species revealing adaptive trade-offs with antimicrobial resistance evolution

GIMa (Genomic Islands in Mycobacterium abscessus) : A genomic island detection tool calibrated for Mycobacteroides abscessus clinical genomics