OpenLIMS is an open-source, self-hosted, production-style Laboratory Information Management System for labs that need sample tracking, inventory management, audit trails, custom fields, instrument imports, sequence workflows, and project collaboration without the cost or complexity of traditional enterprise LIMS platforms.
Standard Tutorial Modules for GNPS Workshops
Documentation for MassIVE workflows and Website
Isotopic interference correction for class-based separation LC-MRM-MS lipidomics data
Isotopes and their intensities of a molecule. Used for mass spectrometry to compare the measured spectra to the theoretical.
MSnbase v2 paper
A comprehensive empirical crustacean neuropeptide database for in-depth, multidisciplinary neuropeptide research
A very basic mzml file plotting program that can plot single scans, merge all scans from a file, plot the TIC, and plot an EIC of a chosen m/z value.
R Shiny app for differential-expression analysis using T-test. The app is automatically deployed via GH Actions to shinyapp.io available as https://fuzzylife.shinyapps.io/diffExpr/
git mirror of the bioconductor version
Code Snippets for proteoBench plots and visualizations
Straightforward principal component analysis for MS data
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