immunohistochemistry

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24, MICCAI'26]

A biologically interpretable graph neural network for multistain computational pathology - CVPR 2025

A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

🌸 Breast epithelium segmentation through IHC-guided supervision

Whole-slide image alignment for H&E and multiplex IHC markers

An application for exporting and analysing tissue array whole slide image files

IHC image real time analyzer

ImaGene: A multimodal ML/AI software with guided operational reports and supporting files

Automated segmentation of H&E and Immunohistochemistry stained synovial tissue in histopathology Whole Slide Images - MIUA 2023

Cell segmentation of multi-channel images

The source code & experiments for the paper: Assessment of Ki-67 proliferation index with deep learning in DCIS (ductal carcinoma in situ)

Cyclic multiplex fluorescent immunohistochemistry and machine learning reveal distinct states of astrocytes and microglia in normal aging and Alzheimer’s disease.

Public demo of MammaScope, a Streamlit-based tool for comparing immunohistochemistry (IHC) and MammaTyper molecular subtyping in breast cancer.

IHC scoring of multi-channel images

Proteomics and IHC data analysis for LGSC and SBT tumour microenvironment study.

AMMIT is an R package designed to streamline the processing of immunofluorescence data.

A neuroscience imaging software for relative quantification of histological brain tissues with intuitive UI. This software offers an end-to-end solution for Immunohistochemistry (IHC) dry lab workflows. Designed for Neuroscience Research and Scientific Publication. Deployed in Biotechnology laboratories in SPPU & RTMNU.

Helicobacter pylori in stomach - Midede Helicobacter pylori

Code associated with Perng et al., "Practical quantification of immunohistochemistry antigen concentrations and reaction-diffusion parameters"

Pancreas Solid Pseudopapillary Neoplasm - Pankreas Solid Psödopapiller Neoplazm