zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the full genome.
NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
Want to make a neighbourhood-scale synteny plot? Have too many genomic neighbourhoods? SyntenyQC may help!
A tool to remove genomic redundancy from cblaster gene cluster hits
Pangenomic analysis of Vibrio jasicida using the anvi'o platform. Identifies 6,853 gene clusters across eight genomes via DIAMOND and MCL clustering, resolving core, accessory, and strain-specific gene content.
Protein structure similarity meets gene clustering mining: find gene clusters from genomically colocalised proteins.
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