Strict orchestration and audit shell for cytochrome P450 Amber MD preprocessing. Ten gated stages with JSON manifests cover heme/CYM, ligand RESP/GAFF2, protonation, solvation, ionization, and pre-MD equilibration.
python bioinformatics molecular-dynamics computational-chemistry wsl resp amber heme cytochrome-p450 cyp450 gaff2 ligand-parameterization
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Updated
Jun 24, 2026 - Python