#
edirect
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A modular, HPC‑oriented pipeline for querying NCBI BioProjects and downloading SRA run data using EDirect and a pinned SRA Toolkit, with restart‑safe, per‑accession isolation and tmux‑based execution on login nodes.
bash tmux workflow bioinformatics genomics hpc reproducible-research ngs ncbi data-pipeline sra sratoolkit edirect bioproject sequencing-data
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Updated
May 14, 2026 - Shell
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