MCP server for spatial transcriptomics analysis through natural language interfaces.

[Donor] Fast Cell-Cell Communication Analysis with Statistical Framework | 快速CCI统计

Generate Sankey plots from merged CellChat objects

Yale Collab with Aarthi (Smita Krishnaswamy group) where I built signalling knowledge graphs to capture cell communications.

[Donor] CCI in Spatial Transcriptomics via Optimal Transport | 空间CCI

[Donor] Identify Novel Cell-Cell Interactions in scRNA-seq | 新型CCI

Customize your specific organism cellchatdb

[Donor] Metabolite-Mediated Cell Communication Analysis | 代谢物通讯

[Donor] Spatial transcriptomics cell communication

[Donor] Multi-sample NicheNet ligand-target analysis

[Donor] CCI-phenotype association framework for scRNA/spatial

[Donor] Differential abundance testing on KNN graphs — TME cell population comparison

[Donor] Cell-cell communication analysis

[Donor] Temporal Cell-Cell Interaction Analysis in scRNA-seq | 伪时序细胞通讯

[Donor] Unified ligand-receptor interaction framework