Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies

Automated 16S sequence extraction using Barrnap output gff files

De novo genome assembly and structural annotation of bacterial isolate SRR25083113 using SPAdes, Prodigal, Barrnap, and ARAGORN — a macOS ARM–compatible pipeline alternative to QUAST/Prokka.