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Refactor#10

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gonzalobenegas merged 22 commits into
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gnomad-common
Jan 30, 2026
Merged

Refactor#10
gonzalobenegas merged 22 commits into
revisionfrom
gnomad-common

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gonzalobenegas and others added 22 commits January 23, 2026 19:48
- Add src/traitgym/matching.py with match_features function for
  feature-based sample matching (moved from other/workflow/rules/common.smk)
- Add tests/test_matching.py with comprehensive test coverage
- Add mendelian_traits_dataset_matched rule for creating matched datasets
- Add mendelian_traits_matched_feature_performance rule for evaluating
  matched feature AUPRC globally and per consequence_final

Co-Authored-By: Claude Opus 4.5 <[email protected]>
@gonzalobenegas
gonzalobenegas merged commit 4886ce0 into revision Jan 30, 2026
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gonzalobenegas deleted the gnomad-common branch January 30, 2026 22:45
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