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Updating hardcoded default adapter set to include PolyA and PolyG #96

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Merged
andrewdavidsmith merged 2 commits into from
May 20, 2026
+5 −3
Merged

Updating hardcoded default adapter set to include PolyA and PolyG #96

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f802435
Configuration/adapter_list.txt: added newline to end of file
andrewdavidsmith May 19, 2026
af0cb1b
src/FalcoConfig.cpp: changed default hard-coded adapters to drop SOLI…
andrewdavidsmith May 19, 2026
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2 changes: 1 addition & 1 deletion Configuration/adapter_list.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -24,4 +24,4 @@ Illumina Small RNA 3' Adapter TGGAATTCTCGG
Illumina Small RNA 5' Adapter GATCGTCGGACT
Nextera Transposase Sequence CTGTCTCTTATA
PolyA AAAAAAAAAAAA
PolyG GGGGGGGGGGGG
PolyG GGGGGGGGGGGG
6 changes: 4 additions & 2 deletions src/FalcoConfig.cpp
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Expand Up @@ -221,7 +221,8 @@ static const auto adapter_names = std::vector<std::string>{
"Illumina Small RNA 3 prime Adapter",
"Illumina Small RNA 5 prime Adapter",
"Nextera Transposase Sequence",
"SOLID Small RNA Adapter",
"PolyA",
"PolyG",
};

// Actual string sequence (eg: ATTGCCACA)
Expand All @@ -231,7 +232,8 @@ static const auto adapter_seqs = std::vector<std::string>{
"TGGAATTCTCGG",
"GATCGTCGGACT",
"CTGTCTCTTATA",
"CGCCTTGGCCGT",
"AAAAAAAAAAAA",
"GGGGGGGGGGGG",
};
// clang-format on

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