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parameter issue

Status: Open.

#86 In shendurelab/MPRAflow;

· perl-xxp opened on Jan 4, 2025

Questions About MPRAflow - Low CRS-BC Associations and Sequencing Details

Status: Open.

#85 In shendurelab/MPRAflow;

· BioSenior opened on Dec 14, 2024

Single-end sequences to associate with the barcodes

Status: Open.

#83 In shendurelab/MPRAflow;

· Will19902225 opened on May 16, 2024

Error: Unable to run job: Job was rejected because job requests unknown queue "short"

Status: Open.

#82 In shendurelab/MPRAflow;

· suntay-jm opened on Mar 14, 2024

map_element_barcodes (assign) [100%] 1 of 1, failed: 1 ✘

Status: Open.

#81 In shendurelab/MPRAflow;

· Will19902225 opened on Feb 23, 2024

Issue with barcode association in MPRAflow

Status: Open.

#79 In shendurelab/MPRAflow;

· tsadlon opened on Oct 10, 2023

Early trunction of barcode fastq file during association step due to known error in pysam < 0.16.0

Status: Open.

#78 In shendurelab/MPRAflow;

· RZiffra opened on Aug 17, 2023

Error at Process generate_mpranalyze_inputs (1) stage

Status: Open.

#77 In shendurelab/MPRAflow;

· Minb88 opened on Jun 16, 2023

Count SE BC + UMI data

Status: Open.

#76 In shendurelab/MPRAflow;

· zkliesmete opened on Apr 11, 2023

Error replicating the MPRA basic association on 5’/5’ WT MRPA data in the HEPG2 cell line from Klein J., Agarwal, V., Keith, A., et al. 2019

Status: Open.

#74 In shendurelab/MPRAflow;

· kimuchenje opened on Nov 11, 2022

Empty counts files

Status: Open.

#69 In shendurelab/MPRAflow;

· renberg opened on Sep 22, 2022

variants option

Status: Open.

#31 In shendurelab/MPRAflow;

· mollywent opened on Dec 2, 2020