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Integration Testing CI Test Failure on python 3.14

Status: Open.

#486 In scverse/SnapATAC2;

· scverse-issue-creator opened on Jul 27, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#485 In scverse/SnapATAC2;

· scverse-issue-creator opened on Jul 26, 2026

Integration Testing CI Test Failure on python 3.14 with prerelease dependencies

Status: Open.

#466 In scverse/SnapATAC2;

· scverse-issue-creator opened on Jun 3, 2026

Error in harmony: 'dimension cannot be changed'

Status: Open.

#465 In scverse/SnapATAC2;

· jeremymsimon opened on May 29, 2026

make_fragment_file silently drops marked duplicates, making frac_duplicates always 0 and fragment counts always 1

Status: Open.

#464 In scverse/SnapATAC2;

· anagchar opened on May 18, 2026

Issue with empty UMAP Plot in SnapATAC2 (v2.9.0)

Status: Open.

#456 In scverse/SnapATAC2;

· yellowlemon8 opened on Apr 2, 2026

Feature Request/Support: Support for mixed fragment_single and fragment_paired keys in AnnDataSet

Status: Open.

#452 In scverse/SnapATAC2;

· wkl1990 opened on Mar 12, 2026

Integration Testing CI Install Failure on python 3.13

Status: Open.

#451 In scverse/SnapATAC2;

· scverse-issue-creator opened on Mar 12, 2026

Integrating Charton for publication-quality, Rust-native plotting (Polars-compatible)

Status: Open.

#450 In scverse/SnapATAC2;

· wangjiawen2013 opened on Mar 1, 2026

Integration Testing CI Test Failure on python 3.13 with prerelease dependencies

Status: Open.

#448 In scverse/SnapATAC2;

· scverse-bot opened on Jan 31, 2026

scvi.external.POISSONMULTIVI function error

Status: Open.

#433 In scverse/SnapATAC2;

· tianlt opened on Nov 11, 2025

Empty peak matrix

Status: Open.

#422 In scverse/SnapATAC2;

· KyriakisDimitrios opened on Oct 15, 2025