Nexus

NEXtflow's Ultimate Streamliner

A command-line interface (CLI) for running bioinformatics workflows written in Nextflow.

Documentation: https://pirl-unc.github.io/nexus/

01. Installation

Download the latest stable release here.

conda create -n nexus python=3.10
conda activate nexus
conda install bioconda::nextflow==24.10.0
pip install nexus-<version>.tar.gz --verbose

02. Dependencies

• Python (>=3.10)
• Nextflow (>=24.10.0)
• PyYAML

03. Usage

View all available subworkflows and workflows

nexus avail

Run a subworkflow or a workflow

nexus run --nf-workflow <WORKFLOW.nf> [workflow-specific parameters]

View (sub)workflow parameters

nexus run --nf-workflow <WORKFLOW.nf> --help

04. License

Licensed under the Apache License, Version 2.0.