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    13 repositories

    • CaLab

      Public
      TypeScript
      •
      MIT License
      •0•0•12•2•Updated Aug 22, 2026Aug 22, 2026

    • CaMAP

      Public
      Calcium imaging mapping and analysis pipeline
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•7•1•Updated Aug 21, 2026Aug 21, 2026

    • fiji_runner

      Public
      ImageJ Macro
      •0•0•0•0•Updated Aug 20, 2026Aug 20, 2026

    • workshop-processing-and-analysis

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Aug 20, 2026Aug 20, 2026

    • mio

      Public
      miniscope I/O sdk
      neurosciencecalcium-imagingmicroscopy
      neurosciencecalcium-imagingmicroscopyminiscope-imagingminiscopesingle-photon
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •3•11•49•5•Updated Aug 19, 2026Aug 19, 2026

    • FuzzyTrack

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Aug 18, 2026Aug 18, 2026

    • noob

      Public
      Python
      •
      MIT License
      •3•11•75•2•Updated Aug 4, 2026Aug 4, 2026

    • miniscope-wired-interconnect-characterization

      Public
      Structured experiment framework for characterizing wired interconnects (cables, connectors, commutators) between Miniscopes and DAQs, with standardized validati…
      Python
      •0•0•0•0•Updated Jul 18, 2026Jul 18, 2026

    • minian

      Public
      miniscope analysis pipeline with interactive visualizations
      Python
      •
      GNU General Public License v3.0
      •49•101•57•3•Updated Jun 30, 2026Jun 30, 2026

    • minisim

      Public
      Simulation suite for calcium imaging
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 24, 2026Jun 24, 2026

    • MiniXL

      Public
      An open-source, large field-of-view epifluorescence miniscope enabling single-cell resolution and multi-region imaging in mice
      GNU General Public License v3.0
      •0•0•0•0•Updated May 19, 2026May 19, 2026

    • citations

      Public
      Python
      •0•0•0•0•Updated May 13, 2026May 13, 2026

    • miniscope-firmware

      Public
      C
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Mar 13, 2026Mar 13, 2026
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