Skip to content

@NakhlehLab The Nakhleh Lab

Change the repository type filter

All

    Repositories list

    10 repositories

    • PhyNetPy

      Public
      A python library for the simulation, analysis, and inference of phylogenetic networks
      Python
      •
      MIT License
      •0•5•4•0•Updated Jul 23, 2026Jul 23, 2026

    • NakhlehLab.github.io

      Public
      Nakhleh Lab web site
      HTML
      •1•0•0•0•Updated Jul 13, 2026Jul 13, 2026

    • PhyloNet

      Public
      Java
      •1•22•10•0•Updated Jun 11, 2026Jun 11, 2026

    • data-error-species-nets

      Public
      Scripts and data for "Impact of Data Error on Phylogenetic Network Inference from Gene Trees Under the Multispecies Network Coalescent"
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 12, 2025May 12, 2025

    • Polyphest

      Public
      Fast Polyploid Phylogeny Estimation
      Python
      •
      MIT License
      •0•3•1•0•Updated Apr 4, 2024Apr 4, 2024

    • Maximal-Homologous-Groups

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 1, 2024Feb 1, 2024

    • MaCroDNA

      Public
      A high-accuracy tool for integrating scDNA-seq and scRNA-seq data
      integrationcancerscrna-seq
      integrationcancerscrna-seqcnv
      Python
      •
      MIT License
      •1•1•0•1•Updated Nov 12, 2023Nov 12, 2023

    • Model-Misspecification

      Public
      Python
      •0•0•0•0•Updated Nov 1, 2022Nov 1, 2022

    • Phylovar

      Public
      Phylovar is a phylogeny-aware SNV caller for single-cell sequencing data that scales up to millions of loci
      Python
      •1•2•0•0•Updated May 15, 2022May 15, 2022

    • MoTERNN

      Public
      Identifying mode of tumor evolution using recursive neural networks
      Python
      •2•3•0•0•Updated May 15, 2022May 15, 2022
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.