Repositories list

• SAFARI

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 2, 2026Aug 2, 2026

• EARLY-questionnaire

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• miRNAInt_Ferroptosis

  Public
  Multi-omics differential expression and integration using PPI networks

  omics-data-integrationdifferential-expression-analysismultiomics+ 1

  omics-data-integrationdifferential-expression-analysismultiomicsprotein-protein-interaction-network

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• TwinWeaver

  Public
  A library for converting EHR data into LLM ingestible text.

  Python

  •

  Apache License 2.0

  •66 forks•2020 stars•00 issues•00 pull requests•Updated Jun 10, 2026Jun 10, 2026

• HelicoPredict-new-main

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 6, 2026Jun 6, 2026

• ncisd_endotypes

  Public
  This is the repository to the paper "Non-communicable inflammatory skin diseases comprise clinically meaningful distinct endotypes as identified by non-hypothes…

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 24, 2026May 24, 2026

• DEG_enrichment_tutorial

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2026May 6, 2026

• mendenlab.github.io

  Public
  Landing page for Menden Lab projects

  CSS

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2026May 6, 2026

• Carotid_artery_plaque

  Public
  scrNA-seq & spatial transcriptomics of carotid artery plaques

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• MAXOMOD_CSF_Proteomics

  Public
  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 15, 2026Feb 15, 2026

• GDT

  Public
  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• DT-GPT

  Public
  Python

  •

  Apache License 2.0

  •1212 forks•2626 stars•00 issues•00 pull requests•Updated Dec 15, 2025Dec 15, 2025

• Pan-can_GEX_biomarkers

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 28, 2025Oct 28, 2025

• TRAF6_HOIP_huTcells_RNAseq

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Oct 12, 2025Oct 12, 2025

• ST_SebaceousGlands

  Public
  Spatial transcriptiomics reveals the role of sebaceous glands in non-communicable inflammatory skin diseases.

  svgsspatialtranscriptomicssebaceousglands+ 1

  svgsspatialtranscriptomicssebaceousglandsglmgampoi

  Python

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 29, 2025Aug 29, 2025

• ST_Mastcells

  Public
  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2025Aug 29, 2025

• Tear-Fluid-Proteomics

  Public
  Machine learning analysis of tear fluid proteomics from ALS and control patients

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 16, 2025Jul 16, 2025

• DEx_StemCells_new

  Public
  Ferroptosis and antioxidant effect on stem cells

  stem-cell-differentiationantioxidantstime-dependent+ 5

  stem-cell-differentiationantioxidantstime-dependentvolcano-plotdifferential-expression-analysesr-softwaredeseq2-analysisferroptosis

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 12, 2025Apr 12, 2025

• Imiquimod_induced_psoriasis

  Public
  This repository contains the code for the biocomputational analysis of the paper "Imiquimod-induced psoriasis depends on antigen specific tissue-resident memory…

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 30, 2024Oct 30, 2024

• premodiALS

  Public
  00 forks•11 star•00 issues•00 pull requests•Updated May 22, 2024May 22, 2024

• tear_fluid_ALS

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 22, 2024May 22, 2024

• atypical_Parkinson

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 13, 2024May 13, 2024

• MAXOMOD_CSF

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2024May 6, 2024

• emtpb

  Public
  Epithelial-mesenchymal transition (EMT) as predictive biomarker

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 12, 2024Jan 12, 2024

• OncoBird

  Public
  Predictive biomarker landscape of oncology trials by leveraging mutually exclusive somatic mutations in tumour subtypes for subgroup analysis.

  R

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Sep 5, 2023Sep 5, 2023

• MALT1_RNAseq

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2023Jul 22, 2023

• pheb

  Public
  Predictive epigenetic drug response biomarkers in high-throughput screens

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 20, 2023Jul 20, 2023

• cardiovascularlifespan

  Public
  This repository contains the code for the analysis of the paper "The impact of the cardiovascular component and somatic mutation on ageing".

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 20, 2023Jun 20, 2023