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@AAGI-AUS Analytics for the Australian Grains Industry (AAGI)

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    Repositories list

    47 repositories

    • 3dmol-viewer-ccdm

      Public
      Protein-protein and interaction viewer for effector-taregt proteins
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•5•0•Updated Aug 29, 2026Aug 29, 2026

    • speed

      Public
      An R package to create spatially optimised experimental designs
      R
      •
      Other
      •5•0•0•0•Updated Aug 28, 2026Aug 28, 2026

    • flexyBayes

      Public
      Bayesian mixed models written in ASReml or brms-style syntax, fitted through INLA or brms, with cross-engine triangulation as a first-class diagnostic
      R
      •
      Other
      •0•0•0•6•Updated Aug 28, 2026Aug 28, 2026

    • ocular

      Public
      Remote sensing tools for the retrieval of commonly used spectral indices in agriculture using Landsat and Sentinel-2 satellite imagery.
      rtime-seriesagriculture
      rtime-seriesagriculturegeospatiallandsatremote-sensingsatellite-imageryimage-segmentationr-packageearth-observation
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 26, 2026Aug 26, 2026

    • causaliflower

      Public
      Graph-based causal analysis in R.
      ragriculturer-package
      ragriculturer-packagecausalitydagcausal-inferencedagittycausal-analysiscausal-graphical-modelscausal-graph
      R
      •
      Other
      •0•0•0•0•Updated Aug 26, 2026Aug 26, 2026

    • geefetch

      Public
      Python-free R interface for extracting spatio-temporal environmental covariates from Google Earth Engine
      R
      •0•0•2•8•Updated Aug 22, 2026Aug 22, 2026

    • PBS-COP

      Public
      RD project for continuous development of a software suite and a community of practice in crop analytics
      MIT License
      •0•0•10•0•Updated Aug 20, 2026Aug 20, 2026

    • nert

      Public
      An API Client for TERN Data Resources
      R
      •
      Other
      •1•3•0•1•Updated Aug 18, 2026Aug 18, 2026

    • MSPlanner-Scripts

      Public
      R/Bash scripts for downloading Microsoft Planner data in a given Team to a CSV.
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • AAGILaTeXTemplates

      Public
      LaTeX (incl. Beamer) templates for AAGI documents and presentations.
      BibTeX Style
      •
      MIT License
      •0•5•0•0•Updated Aug 14, 2026Aug 14, 2026

    • AAGITemplates

      Public archive
      Rmarkdown, LaTeX, and Knitr reporting templates for AAGI staff.
      BibTeX Style
      •
      MIT License
      •3•8•11•0•Updated Aug 14, 2026Aug 14, 2026

    • AAGIOfficeTemplates

      Public
      Microsoft Word and PowerPoint templates for AAGI documents and presentations.
      Other
      •0•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • AAGI-Style-Guide-and-Logos

      Public
      The AAGI Logo and Comms Style Guide and Logo Files
      0•0•9•0•Updated Aug 13, 2026Aug 13, 2026

    • SILO-Weather-Downloader-Plus

      Public
      Interactive R Shiny application for downloading and exporting Grid Point (Data Drill) and APSIM formatted SILO climate datasets. Provides visual and summarised …
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 6, 2026Aug 6, 2026

    • AAGIQuarto

      Public
      A Quarto Extension for AAGI Themed Products, e.g., PDF, Word, HTML, revealjs, and PPT for AAGI staff
      literate-programmingquartoquarto-extension
      literate-programmingquartoquarto-extension
      TeX
      •
      MIT License
      •3•5•2•0•Updated Jul 30, 2026Jul 30, 2026

    • rippo

      Public
      Helper functions that ease preparing the AAGI IPPO register.
      R
      •
      Other
      •1•1•0•0•Updated Jul 29, 2026Jul 29, 2026

    • AAGIThemes

      Public
      AAGI Branding for R Graphical and Tabular Outputs
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jul 20, 2026Jul 20, 2026

    • AAGISurvey

      Public
      Tools for working with AAGI Surveys for Collecting Data from Service and Support Partners
      r
      r
      R
      •
      Other
      •0•0•0•0•Updated Jul 6, 2026Jul 6, 2026

    • CBADASReml

      Public
      A collection of helper functions for small-plot trial analysis using ASReml-R
      ragricultureagriculture-research
      ragricultureagriculture-researchagricultural-modellingagriculture-dataagricultural-analysis
      R
      •
      GNU General Public License v3.0
      •0•1•3•1•Updated Jun 29, 2026Jun 29, 2026

    • ofe-analysis

      Public
      On-Farm Experimentation (OFE) mean analysis package
      R
      •
      MIT License
      •0•0•2•1•Updated Jun 28, 2026Jun 28, 2026

    • Sorientale-structural-mutants

      Public
      In silico protein analysis and docking for the manuscript - Mutational studies in Aux/IAA protein provides new insights into their contribution to auxin herbici…
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 1, 2026Jun 1, 2026

    • PESTO

      Public
      Parameter Estimation, Surrogates, and Tooling for Optimisation — High-performance R package for model-independent parameter estimation and uncertainty quantific…
      R
      •
      Other
      •0•0•0•0•Updated May 28, 2026May 28, 2026

    • aagi-aus.r-universe.dev

      Public
      AAGI-AUS R-Universe Packages
      Other
      •0•0•0•0•Updated May 26, 2026May 26, 2026

    • AAGIPalettes

      Public
      AAGI Colours and Colour Palettes for R
      R
      •
      Other
      •0•3•0•0•Updated May 26, 2026May 26, 2026

    • .github

      Public
      0•0•0•0•Updated May 26, 2026May 26, 2026

    • AAGISurveyApp

      Public
      A Shiny App Front End for Generating AAGI S&S Survey URLs
      R
      •
      Other
      •0•0•0•0•Updated May 26, 2026May 26, 2026

    • kernR

      Public
      Kernel-based causal distributional testing for R (bd-HSIC, DR-DATE, DR-DETT)
      R
      •
      Other
      •0•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • AAGIverse-shared-code

      Public
      Consolidate our analytical code and create a searchable database as part of AAGI-PBS ("AAGIverse")
      R
      •
      GNU General Public License v3.0
      •0•2•9•1•Updated Apr 24, 2026Apr 24, 2026

    • kernP

      Public
      Kernel-based causal distributional testing for Python (bd-HSIC, DR-DATE, DR-DETT)
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • AAGIQuartoExtra

      Public
      Facilitates the Creation of AAGI Quarto Documents
      R
      •
      Other
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026
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