Refactor and add parallel processing#27
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… concordance functions directly to run them faster in parallel
…cript so it doesnt have to be reloaded for every pair
…mors and normals listed in benchmarks
… instead of git clone
…ow and GATK4 in the default installation
…sing fields get parsed incorrectly
…e are currently using for this repo
…or missing fields
…to include full filepath in output
add all updates to the master branch
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This is an update to Conpair that refactors some of the underlying methods to make it easier to work with and also enables some parallel batch processing for lots of tumor - normal comparisons
Includes some helper scripts to enable parallel batch processing of multiple tumor normal pairs along with an example nextflow workflow to run it on the HPC