TMB is software package based on AD (atomatic differentiation) for fitting statistical models. The present repository contains a collection of worked TMB examples provided for educational purposes. The case studies vary widely in nature and complexity.
- Case studies are found in separate folders
- Open the
.Rmd(R Markdown) file in RStudio and push the buttomknit
Model examples
simpleExample
Simple linear regression (your first TMB model). Contains
some basic C++ intro.
pSplines
GAM model based on penalized splines
TMB features
map_example
Turning parameters on-and-off in the estimation
debug_tutorial
Runtime C++ debugging
Spatial statistics
spde
Spatial modeling with (approximate) Matern covariance functions
SPDExAR1
Spatio-temporal modeling
Fisheries
SAM
Stock assessment model
spatialALK
Spatial age-length-key model
Wish list
User contributions are welcome. Topics of interest are
Figthing with the C++ compiler
An example of how to use casting to
combine vector, matrix and array
objects in various variants.