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Can we further tune the outlier filtering to retain true type strain records?

Status: Open.

#89 In nhoffman/ya16sdb;

· marykstewart opened on Jul 19, 2026

Plots not populating

Status: Open.

#82 In nhoffman/ya16sdb;

· marykstewart opened on Aug 13, 2025

Filter outlier type strain records from database

Status: Open.

#80 In nhoffman/ya16sdb;

· marykstewart opened on Jun 5, 2025

Apply for an Amazon Open Data Sponsorship s3 bucket

Manuscript

Status: Open.

#75 In nhoffman/ya16sdb;

· crosenth opened on Jun 28, 2024

Manuscript outline

Documentation

Manuscript

Status: Open.

#73 In nhoffman/ya16sdb;

· nhoffman opened on Jun 24, 2024

Add --{negative}-taxid support to Blast database(s)

Status: Open.

#69 In nhoffman/ya16sdb;

· dhoogest opened on Jun 4, 2024

Slurm compatibility

Status: Open.

#64 In nhoffman/ya16sdb;

· crosenth opened on Jan 26, 2024

requirements.txt should pin all dependencies

Status: Open.

#56 In nhoffman/ya16sdb;

· nhoffman opened on Jun 15, 2023

Type strain record present in latest NCBI_16S build not visible on https://ya16sdb.labmed.uw.edu/

Status: Open.

#54 In nhoffman/ya16sdb;

· marykstewart opened on May 8, 2023

Create a Dash Datatable to visualize seq_info.feather file

Status: Open.

#52 In nhoffman/ya16sdb;

· crosenth opened on Sep 14, 2022

Publication status of NCBI records is not current

Status: Open.

#38 In nhoffman/ya16sdb;

· marykstewart opened on Jun 30, 2020

Distinguish 16S-only records from those that were extracted from whole genomes

enhancement

question

Status: Open.

#32 In nhoffman/ya16sdb;

· marykstewart opened on Feb 15, 2019