Strict template

.github/workflows/nf-test.yml

@@ -64,6 +64,8 @@ jobs:
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test
       - runner=4cpu-linux-x64
+      - volume=80gb
+      - ram=30+34 ## Needed for MALT.
     strategy:
       fail-fast: false
       matrix:

modules.json

@@ -77,7 +77,7 @@
                     },
                     "bwa/index": {
                         "branch": "master",
-                        "git_sha": "e0ff65e1fb313677de09f5f477ae3da30ce19b7b",
+                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                         "installed_by": ["modules"]
                     },
                     "bwa/mem": {
@@ -317,7 +317,7 @@
                     },
                     "samtools/mpileup": {
                         "branch": "master",
-                        "git_sha": "ce0b1aed7d504883061e748f492a31bf44c5777c",
+                        "git_sha": "f0393b4566f19f0d08986c839f28a14d44901bff",
                         "installed_by": ["modules"]
                     },
                     "samtools/sort": {
@@ -328,7 +328,8 @@
                     "samtools/view": {
                         "branch": "master",
                         "git_sha": "8d8f0ae52d6c9342bd41c33dda0b74b07e32153d",
-                        "installed_by": ["bam_split_by_region"]
+                        "installed_by": ["bam_split_by_region"],
+                        "patch": "modules/nf-core/samtools/view/samtools-view.diff"
                     },
                     "seqkit/split2": {
                         "branch": "master",
@@ -377,7 +378,8 @@
                     "bam_split_by_region": {
                         "branch": "master",
                         "git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
-                        "installed_by": ["subworkflows"]
+                        "installed_by": ["subworkflows"],
+                        "patch": "subworkflows/nf-core/bam_split_by_region/bam_split_by_region.diff"
                     },
                     "fastq_align_bwaaln": {
                         "branch": "master",
@@ -392,7 +394,8 @@
                     "utils_nfcore_pipeline": {
                         "branch": "master",
                         "git_sha": "a3fb7351b1fdb2b1de282b765816bbea190e86a8",
-                        "installed_by": ["subworkflows"]
+                        "installed_by": ["subworkflows"],
+                        "patch": "subworkflows/nf-core/utils_nfcore_pipeline/utils_nfcore_pipeline.diff"
                     },
                     "utils_nfschema_plugin": {
                         "branch": "master",