This repository provides auxiliary scripts and workflows to support the reproducibility of results presented in the paper introducing CroCoDeEL.
Purpose: Execute Meteor2 on short-read metagenomic data to generate gene and species abundance tables.
Purpose: Simulates cross-sample contamination by rarefying and combining gene counts, following the specifications in a user-provided table.
Purpose: Simulate sample cross-contamination by subsampling and mixing reads from real metagenomic datasets, following the specifications in a user-provided table.