Mark expected failures by cpaniaguam · Pull Request #982 · lnccbrown/HSSM

cpaniaguam · 2026-06-08T13:02:45Z

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Slow tests failing

===================================== short test summary info =====================================
FAILED tests/slow/test_choice_only.py::test_choice_only_default_params[analytical-numpyro-None-jax-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_choice_only.py::test_choice_only_beta_reg[analytical-numpyro-None-jax-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_choice_only.py::test_choice_only_logit_reg[analytical-numpyro-None-jax-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_choice_only.py::test_choice_only_multiple_reg[analytical-numpyro-None-jax-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_lba_sampling - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_simple_models[analytical-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[analytical-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[analytical-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[analytical-None-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-pytensor-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-pytensor-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-pytensor-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-pytensor-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-jax-None-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-jax-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-jax-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[approx_differentiable-jax-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_simple_models[blackbox-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[blackbox-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_simple_models[blackbox-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[analytical-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[analytical-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[analytical-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[analytical-None-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-pytensor-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-pytensor-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-pytensor-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-pytensor-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-jax-None-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-jax-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-jax-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[approx_differentiable-jax-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models[blackbox-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[blackbox-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models[blackbox-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[analytical-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[analytical-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[analytical-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[analytical-None-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-pytensor-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-pytensor-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-pytensor-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-pytensor-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-jax-None-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-jax-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-jax-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[approx_differentiable-jax-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[blackbox-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[blackbox-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_mcmc.py::test_reg_models_v_a[blackbox-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[analytical-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[analytical-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[analytical-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[analytical-None-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-pytensor-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-pytensor-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-pytensor-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-pytensor-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-jax-None-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-jax-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-jax-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[approx_differentiable-jax-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[blackbox-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[blackbox-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_simple_models_deadline[blackbox-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[analytical-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[analytical-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[analytical-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[analytical-None-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-pytensor-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-pytensor-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-pytensor-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-pytensor-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-jax-None-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-jax-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-jax-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[approx_differentiable-jax-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[blackbox-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[blackbox-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_mcmc.py::test_reg_models_deadline[blackbox-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_simple_models_deadline[approx_differentiable-pytensor-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_simple_models_deadline[approx_differentiable-pytensor-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_simple_models_deadline[approx_differentiable-jax-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_simple_models_deadline[approx_differentiable-jax-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_reg_models_deadline[approx_differentiable-pytensor-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_reg_models_deadline[approx_differentiable-pytensor-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_reg_models_deadline[approx_differentiable-jax-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_and_deadline_vi.py::test_reg_models_deadline[approx_differentiable-jax-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[analytical-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[analytical-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[analytical-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[analytical-None-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-pytensor-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-pytensor-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-pytensor-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-pytensor-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-jax-None-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-jax-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-jax-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[approx_differentiable-jax-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[blackbox-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[blackbox-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_simple_models_missing_data[blackbox-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[analytical-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[analytical-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[analytical-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[analytical-None-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-pytensor-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-pytensor-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-pytensor-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-pytensor-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-jax-None-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-jax-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-jax-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[approx_differentiable-jax-numpyro-None-True] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[blackbox-None-None-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[blackbox-None-pymc-None-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_mcmc.py::test_reg_models_missing_data[blackbox-None-pymc-slice-True] - TypeError: 'tuple' object is not callable
FAILED tests/slow/test_missing_data_vi.py::test_simple_models_missing_data[approx_differentiable-pytensor-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_vi.py::test_simple_models_missing_data[approx_differentiable-pytensor-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_vi.py::test_simple_models_missing_data[approx_differentiable-jax-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_vi.py::test_simple_models_missing_data[approx_differentiable-jax-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_vi.py::test_reg_models_missing_data[approx_differentiable-pytensor-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_vi.py::test_reg_models_missing_data[approx_differentiable-pytensor-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_vi.py::test_reg_models_missing_data[approx_differentiable-jax-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_missing_data_vi.py::test_reg_models_missing_data[approx_differentiable-jax-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_simple_models[approx_differentiable-pytensor-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_simple_models[approx_differentiable-pytensor-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_simple_models[approx_differentiable-jax-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_simple_models[approx_differentiable-jax-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models[approx_differentiable-pytensor-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models[approx_differentiable-pytensor-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models[approx_differentiable-jax-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models[approx_differentiable-jax-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models_v_a[approx_differentiable-pytensor-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models_v_a[approx_differentiable-pytensor-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models_v_a[approx_differentiable-jax-advi-True] - TypeError: No model on context stack.
FAILED tests/slow/test_vi.py::test_reg_models_v_a[approx_differentiable-jax-fullrank_advi-True] - TypeError: No model on context stack.
FAILED tests/test_hssm.py::test_sample_prior_predictive - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_hssm.py::test_sample_do - TypeError: 'tuple' object is not callable
FAILED tests/test_initvals.py::test_sample_map[approx_differentiable-ddm-numpyro-map] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/test_initvals.py::test_sample_map[analytical-ddm-numpyro-map] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/test_initvals.py::test_sample_map[approx_differentiable-angle-numpyro-map] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/test_initvals.py::test_sample_map[approx_differentiable-ddm-numpyro-initial_point] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/test_initvals.py::test_sample_map[analytical-ddm-numpyro-initial_point] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/test_initvals.py::test_sample_map[approx_differentiable-angle-numpyro-initial_point] - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/test_plotting.py::TestPlotting::test__get_plotting_df - TypeError: DataTree.__init__() got an unexpected keyword argument 'posterior_predictive'
FAILED tests/test_plotting.py::TestPlotting::test_plot_predictive - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_plotting.py::TestPlotting::test__plot_quantile_probability_1D[points] - AssertionError: assert 'Density' == 'rt'
FAILED tests/test_plotting.py::TestPlotting::test_plot_quantile_probability[points] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_plotting.py::TestPlotting::test_plot_quantile_probability[ellipse] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_plotting.py::TestPlotting::test_plot_quantile_probability[both] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-True-posterior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-True-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-False-True-posterior_predictive-participant_id-stim] - TypeError: 'tuple' object is not callable
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-False-True-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[0-None-False-True-posterior_predictive-participant_id-stim] - TypeError: 'tuple' object is not callable
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[0-None-False-True-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[0-None-True-False-posterior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[0-None-True-False-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-groups10-True-True-posterior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-groups11-True-True-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-False-posterior_predictive-participant_id-None] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-False-prior_predictive-participant_id-None] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-False-posterior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-False-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-False-posterior_predictive-None-None] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_2_choice[2-None-True-False-prior_predictive-None-None] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-True-posterior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-True-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-False-True-posterior_predictive-participant_id-stim] - TypeError: 'tuple' object is not callable
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-False-True-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[0-None-False-True-posterior_predictive-participant_id-stim] - TypeError: 'tuple' object is not callable
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[0-None-False-True-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[0-None-True-False-posterior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[0-None-True-False-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-False-posterior_predictive-participant_id-None] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-False-prior_predictive-participant_id-None] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-False-posterior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-False-prior_predictive-participant_id-stim] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-False-posterior_predictive-None-None] - AttributeError: 'DataTree' object has no attribute 'assign_coords'
FAILED tests/test_plotting_cartoon.py::test_plot_model_cartoon_3_choice[2-None-True-False-prior_predictive-None-None] - AttributeError: 'DataTree' object has no attribute 'add_groups'
FAILED tests/test_rlssm.py::test_rlssm_sample_smoke - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[1-False-False] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[1-True-False] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[None-True-False] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[50-True-False] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[draws4-True-False] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[1-False-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[1-True-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[None-True-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[50-False-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[50-True-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[draws10-False-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[draws11-True-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[draws12-False-False] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[draws13-True-False] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[draws14-False-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_sample_posterior_predictive.py::test_sample_posterior_predictive[draws15-True-True] - AttributeError: 'DataTree' object has no attribute 'posterior_predictive'
FAILED tests/test_save_load.py::test_save_load_vi_mcmc - TypeError: NUTS.__init__() got an unexpected keyword argument 'jitter'
ERROR tests/test_plotting_cartoon.py::test_plot_model_cartoon_intercept_only - TypeError: DataTree.__init__() got an unexpected keyword argument 'posterior'

…tive_idata_to_dataframe

…rray NetCDF backends

…t_sample_do

…or on NUTS initialization

…y due to TypeError on DataTree initialization

…predictive due to TypeErrors on DataTree initialization

…to AttributeError on DataTree initialization

…ror on NUTS initialization

… NUTS initialization

…UTS initialization

…Tree compatibility errors

…S initialization

…UTS initialization

cpaniaguam · 2026-06-08T21:57:38Z

Other (long) failing tests are due to the lack of IO backends -- see this and #975.

digicosmos86 · 2026-06-15T13:36:53Z

@cpaniaguam is this ready to merge? It's still marked as WIP

digicosmos86 · 2026-06-15T13:38:32Z

      fail-fast: true
      matrix:
-        python-version: ["3.11", "3.12", "3.13"]
+        python-version: ["3.11", "3.12"]


Why was Python 3.13 removed?

I think CI was breaking for this version of Python. I added it back to see what happens.

cpaniaguam added 18 commits June 8, 2026 09:01

test: mark expected failures for test_make_rl_logp_op and test_predic…

095a49a

…tive_idata_to_dataframe

test: mark expected failure for test__random_sample due to missing xa…

9ba14b1

…rray NetCDF backends

test: mark expected failures for test_sample_prior_predictive and tes…

4b7e6f8

…t_sample_do

test: mark expected failure for run_vi due to TypeError on context stack

2abfb6a

test: mark expected failure for test_save_load_vi_mcmc due to TypeErr…

8458941

…or on NUTS initialization

test: mark expected failure for test_plot_model_cartoon_intercept_onl…

7e42e84

…y due to TypeError on DataTree initialization

test: mark expected failures for test__get_plotting_df and test_plot_…

ec9a89c

…predictive due to TypeErrors on DataTree initialization

test: mark expected failure for test_sample_posterior_predictive due …

9fea404

…to AttributeError on DataTree initialization

test: mark expected failure for test_rlssm_sample_smoke due to TypeEr…

b62a9af

…ror on NUTS initialization

test: mark expected failure for test_lba_sampling due to TypeError on…

5bef3e1

… NUTS initialization

test: mark expected failure for test_sample_map due to TypeError on N…

5498ad0

…UTS initialization

test: mark expected failures for plot_model_cartoon tests due to Data…

98ac3a7

…Tree compatibility errors

test: mark expected failure for numpyro tests due to TypeError on NUT…

6ee84ff

…S initialization

test: mark expected failure for numpyro sampler due to TypeError on N…

bb3b25f

…UTS initialization

test: mark expected failure for numpyro sampler due to TypeError on N…

5bed78e

…UTS initialization

test: mark expected failure for run_vi due to TypeError on context stack

574aa6b

test: mark expected failure for numpyro sampler due to TypeError on N…

74b293b

…UTS initialization

test: mark expected failure for run_vi due to TypeError on context stack

c305615

cpaniaguam changed the title ~~Mark expected failures for test_make_rl_logp_op and test_predictive_idata_to_dataframe~~ Mark expected failures Jun 8, 2026

cpaniaguam mentioned this pull request Jun 8, 2026

Initial migration to pymc6 #973

Merged

test: remove Python 3.13 from test matrix

4d74473

cpaniaguam marked this pull request as ready for review June 15, 2026 13:37

digicosmos86 reviewed Jun 15, 2026

View reviewed changes

Add Python 3.13 to test matrix

e6f00f3

digicosmos86 merged commit 29d49a0 into 970-compatibility-with-pymc6 Jun 16, 2026
3 of 4 checks passed

digicosmos86 deleted the cpaniaguam/mark-failing-tests branch June 16, 2026 12:50

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Mark expected failures#982

Mark expected failures#982
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cpaniaguam commented Jun 8, 2026 •

edited

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cpaniaguam commented Jun 8, 2026 •

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