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kagansaglam/README.md

Kağan Sağlam

Bioinformatics MSc @ University of Bologna
Bioinformatics Intern @ Josep Carreras Leukaemia Research Institute, Barcelona

What I work on

  • Subcellular spatial transcriptomics — comparing statistical and biclustering methods for RNA localization (10x Xenium)
  • Proteogenomics — lncRNA-derived micropeptide discovery via LC-MS/MS
  • ResistAI: antibiotic resistance druggability platform (fpocket · ESM-2 · XGBoost · RAG)

Stack

Python R Nextflow Slurm Singularity Docker Linux

Links

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  1. post-gwas-alzheimer post-gwas-alzheimer Public

    Multi-tool Post-GWAS pipeline for Alzheimer's Disease — SNP to pathway analysis with HyPrColoc colocalization

    R