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synthspot

PLEASE SEE ORIGINAL SYNTHSPOT here

This is a forked synthspot with:

  1. Updated Seuratv5 compatibility.
  2. Ability to set specific cell fractions in specific mintest cell regions while keeping reminaing fractions proportional to region cell probabilities. (See benchdeconv)
  3. Ability to set dominant/missing cell type of choice

(See --help for added flags.)

PLEASE SEE ORIGINAL SYNTHSPOT here

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synthspot: package to generate synthetic Visium-like spot data

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