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Cheeseman Lab

Whitehead Institute

7 followers
United States of America
https://cheesemanlab.wi.mit.edu/

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brieflow brieflow Public

Extensible pipeline tool for processing optical pooled screens data.

Python 27 35
swissisoform swissisoform Public

Python 2
brieflow-analysis brieflow-analysis Public template

Template repository for optical pooled screens that use brieflow.

Jupyter Notebook 10

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Showing 10 of 38 repositories

swissisoform-v2 Public
SwissIsoform v2 — modular pipeline for annotating alternative protein isoforms from TI-seq

cheeseman-lab/swissisoform-v2's past year of commit activity

Python 1 0 8 0 Updated Jul 22, 2026
mozzarellm Public
Tool for analyzing clusters of genes using LLM providers.

cheeseman-lab/mozzarellm's past year of commit activity

Python 30 MIT 4 0 0 Updated Jul 20, 2026
brieflow-analysis Public template
Template repository for optical pooled screens that use brieflow.

cheeseman-lab/brieflow-analysis's past year of commit activity

Jupyter Notebook 0 MIT 10 0 1 Updated Jul 19, 2026
brieflow Public
Extensible pipeline tool for processing optical pooled screens data.

cheeseman-lab/brieflow's past year of commit activity

Python 27 MIT 35 3 2 Updated Jul 19, 2026
goudacell Public

cheeseman-lab/goudacell's past year of commit activity

Python 0 0 0 0 Updated Jul 17, 2026
affinage Public

cheeseman-lab/affinage's past year of commit activity

Python 4 MIT 0 0 0 Updated Jul 6, 2026
aconcagua-analysis Public

cheeseman-lab/aconcagua-analysis's past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated May 15, 2026
logan-analysis Public

cheeseman-lab/logan-analysis's past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated May 4, 2026
etna-analysis Public

cheeseman-lab/etna-analysis's past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated May 4, 2026
whitney-analysis Public

cheeseman-lab/whitney-analysis's past year of commit activity

Jupyter Notebook 1 MIT 1 0 1 Updated May 4, 2026

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