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Dockerfile updates: #205

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Dockerfile updates: #205

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10 changes: 8 additions & 2 deletions Dockerfile
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Expand Up @@ -50,11 +50,17 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) {install.p
# python modules
RUN pip3 install --upgrade pip setuptools
RUN pip3 install numpy pandas scipy
RUN pip3 install pandas-plink ipython jupyter matplotlib pyarrow torch rpy2 gcsfs Pgenlib>=0.90.1
RUN pip3 install tensorqtl==1.0.9
# Make sure we support Tesla P100-PCIE-16GB with CUDA capability sm_60
# Via https://pytorch.org/get-started/locally/
RUN pip3 install torch --index-url https://download.pytorch.org/whl/cu126
RUN pip3 install pandas-plink ipython jupyter matplotlib pyarrow rpy2 gcsfs Pgenlib>=0.90.1

# RUN cd /opt && \
# wget https://github.com/broadinstitute/tensorqtl/archive/v1.0.8.tar.gz && \
# tar -xf v1.0.8.tar.gz && mv tensorqtl-1.0.8 tensorqtl && \
# rm v1.0.8.tar.gz
# RUN pip3 install /opt/tensorqtl/

COPY pyproject.toml LICENSE README.md /opt/tensorqtl/
COPY tensorqtl/ /opt/tensorqtl/tensorqtl/
RUN pip3 install /opt/tensorqtl