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brew install bedtools takes forever to run

Status: Open.

#170 In arq5x/bedtools;

· zichenzhang04 opened on Jul 16, 2024

Multiinter for BEDPE files?

Status: Open.

#168 In arq5x/bedtools;

· alistairhockey opened on Aug 16, 2023

Reads doubled when using bamtofastq

Status: Open.

#167 In arq5x/bedtools;

· jonathan-bravo opened on Jun 27, 2023

has inconsistent naming convention for record

Status: Open.

#166 In arq5x/bedtools;

· CherryX727 opened on Oct 22, 2022

Merge delimiter for input file to define how to number columns

Status: Open.

#165 In arq5x/bedtools;

· nroak opened on Aug 12, 2022

bedtools makewindows with large genome size

Status: Open.

#164 In arq5x/bedtools;

· leegene1992 opened on Mar 25, 2022

Including the cigar field when in bamToBed with the -splitD argument

Status: Open.

#163 In arq5x/bedtools;

· ndrubins opened on Dec 24, 2021

bedtools fisher - how the possible intervals estimated?

Status: Open.

#162 In arq5x/bedtools;

· ohdongha opened on Oct 13, 2021

Extract all genes within 5 kb, 10 kb of a genomic range.

Status: Open.

#160 In arq5x/bedtools;

· demis001 opened on Jun 12, 2020

bedtools window produces negative values

Status: Open.

#159 In arq5x/bedtools;

· BenxiaHu opened on May 4, 2020

Feature request force strandedness (-s) for complement

Status: Open.

#157 In arq5x/bedtools;

· SumNeuron opened on Oct 31, 2019

maskfasta mangles files with mixed line-endings

Status: Open.

#156 In arq5x/bedtools;

· bartgrantham opened on Oct 22, 2019