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Implement ParquetFormatModel and update write_file to use the format API #3381
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -43,6 +43,7 @@ | |
| from enum import Enum | ||
| from functools import lru_cache, singledispatch | ||
| from typing import ( | ||
| IO, | ||
| TYPE_CHECKING, | ||
| Any, | ||
| Generic, | ||
|
|
@@ -122,6 +123,7 @@ | |
| OutputStream, | ||
| ) | ||
| from pyiceberg.io.fileformat import DataFileStatistics as DataFileStatistics | ||
| from pyiceberg.io.fileformat import FileFormatFactory, FileFormatModel, FileFormatWriter | ||
| from pyiceberg.manifest import ( | ||
| DataFile, | ||
| DataFileContent, | ||
|
|
@@ -1884,6 +1886,7 @@ def _to_requested_schema( | |
| include_field_ids: bool = False, | ||
| projected_missing_fields: dict[int, Any] = EMPTY_DICT, | ||
| allow_timestamp_tz_mismatch: bool = False, | ||
| file_format: FileFormat = FileFormat.PARQUET, | ||
| ) -> pa.RecordBatch: | ||
| # We could reuse some of these visitors | ||
| struct_array = visit_with_partner( | ||
|
|
@@ -1895,6 +1898,7 @@ def _to_requested_schema( | |
| include_field_ids, | ||
| projected_missing_fields=projected_missing_fields, | ||
| allow_timestamp_tz_mismatch=allow_timestamp_tz_mismatch, | ||
| file_format=file_format, | ||
| ), | ||
| ArrowAccessor(file_schema), | ||
| ) | ||
|
|
@@ -1907,6 +1911,7 @@ class ArrowProjectionVisitor(SchemaWithPartnerVisitor[pa.Array, pa.Array | None] | |
| _downcast_ns_timestamp_to_us: bool | ||
| _projected_missing_fields: dict[int, Any] | ||
| _allow_timestamp_tz_mismatch: bool | ||
| _file_format: FileFormat | ||
|
|
||
| def __init__( | ||
| self, | ||
|
|
@@ -1915,6 +1920,7 @@ def __init__( | |
| include_field_ids: bool = False, | ||
| projected_missing_fields: dict[int, Any] = EMPTY_DICT, | ||
| allow_timestamp_tz_mismatch: bool = False, | ||
| file_format: FileFormat = FileFormat.PARQUET, | ||
|
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I'm not wild about making PARQUET the default value (I don't think we should have default values...), but that's a light opinion. |
||
| ) -> None: | ||
| self._file_schema = file_schema | ||
| self._include_field_ids = include_field_ids | ||
|
|
@@ -1923,6 +1929,7 @@ def __init__( | |
| # When True, allows projecting timestamptz (UTC) to timestamp (no tz). | ||
| # Allowed for reading (aligns with Spark); disallowed for writing to enforce Iceberg spec's strict typing. | ||
| self._allow_timestamp_tz_mismatch = allow_timestamp_tz_mismatch | ||
| self._file_format = file_format | ||
|
|
||
| def _cast_if_needed(self, field: NestedField, values: pa.Array) -> pa.Array: | ||
| file_field = self._file_schema.find_field(field.field_id) | ||
|
|
@@ -1981,9 +1988,12 @@ def _construct_field(self, field: NestedField, arrow_type: pa.DataType) -> pa.Fi | |
| if field.doc: | ||
| metadata[PYARROW_FIELD_DOC_KEY] = field.doc | ||
| if self._include_field_ids: | ||
| # For projection visitor, we don't know the file format, so default to Parquet | ||
| # This is used for schema conversion during reads, not writes | ||
| metadata[PYARROW_PARQUET_FIELD_ID_KEY] = str(field.field_id) | ||
| if self._file_format == FileFormat.ORC: | ||
|
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Ideally, we'd have a FileFormat API method called Part of the hope for the FileFormat API was to avoid these kind of switch statements based on the format. |
||
| metadata[ORC_FIELD_ID_KEY] = str(field.field_id) | ||
| else: | ||
| metadata[PYARROW_PARQUET_FIELD_ID_KEY] = str(field.field_id) | ||
| if self._file_format == FileFormat.ORC: | ||
| metadata[ORC_FIELD_REQUIRED_KEY] = str(field.required).lower() | ||
|
|
||
| return pa.field( | ||
| name=field.name, | ||
|
|
@@ -2602,21 +2612,87 @@ def data_file_statistics_from_parquet_metadata( | |
| ) | ||
|
|
||
|
|
||
| class ParquetFormatWriter(FileFormatWriter): | ||
| """Writes Arrow tables to a Parquet file.""" | ||
|
|
||
| def __init__(self, output_file: OutputFile, file_schema: Schema, properties: Properties) -> None: | ||
| self._output_file = output_file | ||
| self._file_schema = file_schema | ||
| self._properties = properties | ||
| self._writer: pq.ParquetWriter | None = None | ||
| self._fos: OutputStream | None = None | ||
| self._parquet_writer_kwargs = _get_parquet_writer_kwargs(properties) | ||
| self._row_group_size = property_as_int( | ||
| properties=properties, | ||
| property_name=TableProperties.PARQUET_ROW_GROUP_LIMIT, | ||
| default=TableProperties.PARQUET_ROW_GROUP_LIMIT_DEFAULT, | ||
| ) | ||
|
|
||
| def write(self, table: pa.Table) -> None: | ||
| if self._writer is None: | ||
| self._fos = self._output_file.create(overwrite=True) | ||
| self._writer = pq.ParquetWriter( | ||
| cast(IO[Any], self._fos), | ||
| schema=table.schema, | ||
| store_decimal_as_integer=True, | ||
| **self._parquet_writer_kwargs, | ||
| ) | ||
| self._writer.write(table, row_group_size=self._row_group_size) | ||
|
|
||
| def close(self) -> DataFileStatistics: | ||
| if self._result is not None: | ||
| return self._result | ||
| try: | ||
| if self._writer is None: | ||
| raise ValueError("Cannot close a writer that was never written to") | ||
| self._writer.close() | ||
| self._result = data_file_statistics_from_parquet_metadata( | ||
| parquet_metadata=self._writer.writer.metadata, | ||
| stats_columns=compute_statistics_plan(self._file_schema, self._properties), | ||
| parquet_column_mapping=parquet_path_to_id_mapping(self._file_schema), | ||
| ) | ||
| return self._result | ||
| finally: | ||
| if self._fos is not None: | ||
| self._fos.close() | ||
|
|
||
|
|
||
| class ParquetFormatModel(FileFormatModel): | ||
| """Format model for Apache Parquet.""" | ||
|
|
||
| @property | ||
| def format(self) -> FileFormat: | ||
| return FileFormat.PARQUET | ||
|
|
||
| def file_extension(self) -> str: | ||
| return "parquet" | ||
|
|
||
| def create_writer( | ||
| self, | ||
| output_file: OutputFile, | ||
| file_schema: Schema, | ||
| properties: Properties, | ||
| ) -> ParquetFormatWriter: | ||
| return ParquetFormatWriter(output_file, file_schema, properties) | ||
|
|
||
|
|
||
| FileFormatFactory.register(ParquetFormatModel()) | ||
|
|
||
|
|
||
| def write_file(io: FileIO, table_metadata: TableMetadata, tasks: Iterator[WriteTask]) -> Iterator[DataFile]: | ||
| from pyiceberg.table import DOWNCAST_NS_TIMESTAMP_TO_US_ON_WRITE, TableProperties | ||
|
|
||
| parquet_writer_kwargs = _get_parquet_writer_kwargs(table_metadata.properties) | ||
| row_group_size = property_as_int( | ||
| properties=table_metadata.properties, | ||
| property_name=TableProperties.PARQUET_ROW_GROUP_LIMIT, | ||
| default=TableProperties.PARQUET_ROW_GROUP_LIMIT_DEFAULT, | ||
| file_format = FileFormat( | ||
| table_metadata.properties.get( | ||
| TableProperties.WRITE_FILE_FORMAT, | ||
| TableProperties.WRITE_FILE_FORMAT_DEFAULT, | ||
| ) | ||
| ) | ||
| format_model = FileFormatFactory.get(file_format) | ||
| location_provider = load_location_provider(table_location=table_metadata.location, table_properties=table_metadata.properties) | ||
|
|
||
| def write_parquet(task: WriteTask) -> DataFile: | ||
| def write_data_file(task: WriteTask) -> DataFile: | ||
| table_schema = table_metadata.schema() | ||
| # if schema needs to be transformed, use the transformed schema and adjust the arrow table accordingly | ||
| # otherwise use the original schema | ||
| if (sanitized_schema := sanitize_column_names(table_schema)) != table_schema: | ||
| file_schema = sanitized_schema | ||
| else: | ||
|
|
@@ -2630,29 +2706,25 @@ def write_parquet(task: WriteTask) -> DataFile: | |
| batch=batch, | ||
| downcast_ns_timestamp_to_us=downcast_ns_timestamp_to_us, | ||
| include_field_ids=True, | ||
| file_format=file_format, | ||
| ) | ||
| for batch in task.record_batches | ||
| ] | ||
| arrow_table = pa.Table.from_batches(batches) | ||
| file_path = location_provider.new_data_location( | ||
| data_file_name=task.generate_data_file_filename("parquet"), | ||
| data_file_name=task.generate_data_file_filename(format_model.file_extension()), | ||
| partition_key=task.partition_key, | ||
| ) | ||
| fo = io.new_output(file_path) | ||
| with fo.create(overwrite=True) as fos: | ||
| with pq.ParquetWriter( | ||
| fos, schema=arrow_table.schema, store_decimal_as_integer=True, **parquet_writer_kwargs | ||
| ) as writer: | ||
| writer.write(arrow_table, row_group_size=row_group_size) | ||
| statistics = data_file_statistics_from_parquet_metadata( | ||
| parquet_metadata=writer.writer.metadata, | ||
| stats_columns=compute_statistics_plan(file_schema, table_metadata.properties), | ||
| parquet_column_mapping=parquet_path_to_id_mapping(file_schema), | ||
| ) | ||
| data_file = DataFile.from_args( | ||
| writer = format_model.create_writer(fo, file_schema, table_metadata.properties) | ||
| with writer: | ||
| writer.write(arrow_table) | ||
| statistics = writer.result() | ||
|
|
||
| return DataFile.from_args( | ||
| content=DataFileContent.DATA, | ||
| file_path=file_path, | ||
| file_format=FileFormat.PARQUET, | ||
| file_format=file_format, | ||
| partition=task.partition_key.partition if task.partition_key else Record(), | ||
| file_size_in_bytes=len(fo), | ||
| # After this has been fixed: | ||
|
|
@@ -2666,10 +2738,8 @@ def write_parquet(task: WriteTask) -> DataFile: | |
| **statistics.to_serialized_dict(), | ||
| ) | ||
|
|
||
| return data_file | ||
|
|
||
| executor = ExecutorFactory.get_or_create() | ||
| data_files = executor.map(write_parquet, tasks) | ||
| data_files = executor.map(write_data_file, tasks) | ||
|
|
||
| return iter(data_files) | ||
|
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|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,155 @@ | ||
| # Licensed to the Apache Software Foundation (ASF) under one | ||
| # or more contributor license agreements. See the NOTICE file | ||
| # distributed with this work for additional information | ||
| # regarding copyright ownership. The ASF licenses this file | ||
| # to you under the Apache License, Version 2.0 (the | ||
| # "License"); you may not use this file except in compliance | ||
| # with the License. You may obtain a copy of the License at | ||
| # | ||
| # http://www.apache.org/licenses/LICENSE-2.0 | ||
| # | ||
| # Unless required by applicable law or agreed to in writing, | ||
| # software distributed under the License is distributed on an | ||
| # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | ||
| # KIND, either express or implied. See the License for the | ||
| # specific language governing permissions and limitations | ||
| # under the License. | ||
|
|
||
| """Parametrized format writer tests, modeled after Java's BaseFormatModelTests.""" | ||
|
|
||
| from pathlib import Path | ||
|
|
||
| import pyarrow as pa | ||
| import pyarrow.dataset as ds | ||
| import pytest | ||
|
|
||
| from pyiceberg.io.fileformat import FileFormatFactory, FileFormatModel | ||
| from pyiceberg.io.pyarrow import PyArrowFileIO | ||
| from pyiceberg.manifest import FileFormat | ||
| from pyiceberg.schema import Schema | ||
| from pyiceberg.types import LongType, NestedField | ||
|
|
||
|
|
||
| @pytest.fixture(params=FileFormatFactory.available_formats(), ids=lambda f: f.name.lower()) | ||
| def format_model(request: pytest.FixtureRequest) -> FileFormatModel: | ||
| return FileFormatFactory.get(request.param) | ||
|
|
||
|
|
||
| @pytest.fixture | ||
| def simple_table() -> pa.Table: | ||
|
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. We've got a few tables in tests/conftest.py. Any reason not to use those? |
||
| return pa.table( | ||
| { | ||
| "foo": ["a", "b", "c"], | ||
| "bar": pa.array([1, 2, 3], type=pa.int32()), | ||
| "baz": [True, False, True], | ||
| } | ||
| ) | ||
|
|
||
|
|
||
| def test_parquet_registered() -> None: | ||
| """ParquetFormatModel is registered in the factory.""" | ||
| model = FileFormatFactory.get(FileFormat.PARQUET) | ||
| assert model.format == FileFormat.PARQUET | ||
| assert model.file_extension() == "parquet" | ||
|
|
||
|
|
||
| def test_round_trip(format_model: FileFormatModel, table_schema_simple: Schema, simple_table: pa.Table, tmp_path: Path) -> None: | ||
| """Write a table and read it back, to verify equality and record count.""" | ||
| file_path = str(tmp_path / f"test.{format_model.file_extension()}") | ||
| writer = format_model.create_writer(PyArrowFileIO().new_output(file_path), table_schema_simple, {}) | ||
| writer.write(simple_table) | ||
| statistics = writer.close() | ||
|
|
||
| result = ds.dataset(file_path).to_table() | ||
| assert result.equals(simple_table) | ||
| assert statistics.record_count == 3 | ||
|
|
||
|
|
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| def test_statistics_record_count(format_model: FileFormatModel, table_schema_simple: Schema, tmp_path: Path) -> None: | ||
| """close() returns DataFileStatistics with correct record count.""" | ||
| table = pa.table( | ||
|
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Why recreate a different table here? |
||
| { | ||
| "foo": ["a", "b", "c", "d", "e"], | ||
| "bar": pa.array([10, 20, 30, 40, 50], type=pa.int32()), | ||
| "baz": [True] * 5, | ||
| } | ||
| ) | ||
| file_path = str(tmp_path / f"test.{format_model.file_extension()}") | ||
| writer = format_model.create_writer(PyArrowFileIO().new_output(file_path), table_schema_simple, {}) | ||
| writer.write(table) | ||
| assert writer.close().record_count == 5 | ||
|
|
||
|
|
||
| def test_null_handling(format_model: FileFormatModel, table_schema_simple: Schema, tmp_path: Path) -> None: | ||
| """Nullable columns produce correct null_value_counts in statistics.""" | ||
| table = pa.table( | ||
| { | ||
| "foo": ["a", None, "c"], # field_id=1, optional | ||
| "bar": pa.array([1, 2, 3], type=pa.int32()), # field_id=2, required | ||
| "baz": [True, False, True], # field_id=3, optional | ||
| } | ||
| ) | ||
| file_path = str(tmp_path / f"test.{format_model.file_extension()}") | ||
| writer = format_model.create_writer(PyArrowFileIO().new_output(file_path), table_schema_simple, {}) | ||
| writer.write(table) | ||
| stats = writer.close() | ||
| assert stats.record_count == 3 | ||
| assert stats.null_value_counts.get(1) == 1 | ||
|
|
||
|
|
||
| def test_context_manager_caches_result( | ||
| format_model: FileFormatModel, table_schema_simple: Schema, simple_table: pa.Table, tmp_path: Path | ||
| ) -> None: | ||
| """writer.result() returns cached statistics after context manager exit.""" | ||
| file_path = str(tmp_path / f"test.{format_model.file_extension()}") | ||
| writer = format_model.create_writer(PyArrowFileIO().new_output(file_path), table_schema_simple, {}) | ||
| with writer: | ||
| writer.write(simple_table) | ||
| assert writer.result().record_count == 3 | ||
|
|
||
|
|
||
| def test_close_is_idempotent( | ||
| format_model: FileFormatModel, table_schema_simple: Schema, simple_table: pa.Table, tmp_path: Path | ||
| ) -> None: | ||
| """Calling close() twice returns the same cached statistics object.""" | ||
| file_path = str(tmp_path / f"test.{format_model.file_extension()}") | ||
| writer = format_model.create_writer(PyArrowFileIO().new_output(file_path), table_schema_simple, {}) | ||
| writer.write(simple_table) | ||
| stats1 = writer.close() | ||
| stats2 = writer.close() | ||
| assert stats1 is stats2 | ||
|
|
||
|
|
||
| def test_close_without_write_raises(format_model: FileFormatModel, table_schema_simple: Schema, tmp_path: Path) -> None: | ||
| """Closing a writer that was never written to raises ValueError.""" | ||
| file_path = str(tmp_path / f"test.{format_model.file_extension()}") | ||
| writer = format_model.create_writer(PyArrowFileIO().new_output(file_path), table_schema_simple, {}) | ||
| with pytest.raises(ValueError, match="Cannot close a writer that was never written to"): | ||
| writer.close() | ||
|
|
||
|
|
||
| def test_construct_field_uses_orc_field_id_key() -> None: | ||
| """ArrowProjectionVisitor uses ORC field ID and required keys when file_format is ORC.""" | ||
| from pyiceberg.io.pyarrow import ( | ||
| ORC_FIELD_ID_KEY, | ||
| ORC_FIELD_REQUIRED_KEY, | ||
| PYARROW_PARQUET_FIELD_ID_KEY, | ||
| ArrowProjectionVisitor, | ||
| ) | ||
|
|
||
| schema = Schema(NestedField(field_id=1, name="x", field_type=LongType(), required=True)) | ||
|
|
||
| visitor = ArrowProjectionVisitor(schema, include_field_ids=True, file_format=FileFormat.ORC) | ||
| field = visitor._construct_field(schema.find_field(1), pa.int64()) | ||
| assert field.metadata is not None | ||
| assert ORC_FIELD_ID_KEY in field.metadata | ||
| assert ORC_FIELD_REQUIRED_KEY in field.metadata | ||
| assert field.metadata[ORC_FIELD_REQUIRED_KEY] == b"true" | ||
| assert PYARROW_PARQUET_FIELD_ID_KEY not in field.metadata | ||
|
|
||
| visitor_pq = ArrowProjectionVisitor(schema, include_field_ids=True, file_format=FileFormat.PARQUET) | ||
| field_pq = visitor_pq._construct_field(schema.find_field(1), pa.int64()) | ||
| assert field_pq.metadata is not None | ||
| assert PYARROW_PARQUET_FIELD_ID_KEY in field_pq.metadata | ||
| assert ORC_FIELD_ID_KEY not in field_pq.metadata | ||
| assert ORC_FIELD_REQUIRED_KEY not in field_pq.metadata | ||
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Same thing, not wild about the default value.