feat(packaging): split dependencies between aignostics-sdk and aignostics [PYSDK-138]

packages/aignostics-sdk/pyproject.toml

@@ -77,89 +77,41 @@ requires-python = ">=3.11, <3.15"
 dependencies = [
     # From Template
     "fastapi[all,standard]>=0.123.10",
-    "humanize>=4.14.0,<5",
     "nicegui[native]>=3.11.0,<4",
-    "packaging>=26,<27",
     "platformdirs>=4.5.1,<5",
     "psutil>=7.1.3,<8",
     "pydantic-settings>=2.12.0,<3",
     "pywin32>=311,<312; sys_platform == 'win32'",
-    "pyyaml>=6.0.3,<7",
     "sentry-sdk>=2.47.0,<3",
     "typer>=0.20.0,<1",
-    # Custom
-    "boto3>=1.42.4,<2",
+    # Custom — slim platform + utils deps
     "certifi>=2025.11.12",
-    "defusedxml>=0.7.1",
-    "dicom-validator>=0.7.3,<1",
-    "dicomweb-client[gcp]>=0.59.3,<1",
-    "duckdb>=1.4.2,<=2",
-    "google-cloud-storage>=3.6.0,<4",
-    "crc32c>=2.8,<3",
-    "highdicom>=0.26.1,<1; python_version < '3.14'",
-    "html-sanitizer>=2.6.0,<3",
+    "crc32c>=2.8,<3",                    # used in platform/_utils.py for file upload checksums
+    "fastmcp>=3.2.0,<4",
     "httpx>=0.28.1,<1",
-    "idc-index-data==24.0.3",
-    "ijson>=3.4.0.post0,<4",
-    "jsf>=0.11.2,<1",
     "jsonschema[format-nongpl]>=4.25.1,<5",
+    "jsf>=0.11.2,<1",
     "loguru>=0.7.3,<1",
-    "openslide-bin>=4.0.0.10,<5",
-    "openslide-python>=1.4.3,<2",
-    "pandas>=2.3.3,<4",
-    "platformdirs>=4.3.2,<5",
-    "procrastinate>=3.5.3",
-    "fastparquet>=2026.3.0,<2026.4.0; python_version < '3.14'",
-    "pyarrow>=23.0.1,<24; python_version >= '3.14'",
     "pyjwt[crypto]>=2.12.0,<3",
-    "python-dateutil>=2.9.0.post0,<3",
     "requests>=2.33.0,<3",
     "requests-oauthlib>=2.0.0,<3",
-    "s5cmd>=0.3.3,<1",
     "semver>=3.0.4,<4",
-    "shapely>=2.1.2,<3",
     "tenacity>=9.1.2,<10",
     "tqdm>=4.67.1,<5",
     "truststore>=0.10.4,<1",
     "urllib3>=2.6.3,<3",
-    "wsidicom>=0.28.1,<1",
-    "fastmcp>=3.2.0,<4",
-    # Transitive overrides
+    # Transitive CVE overrides for slim deps
     "rfc3987; sys_platform == 'never'",
     "h11>=0.16.0",
-    "tornado>=6.5.5",
-    "urllib3>=2.5.0",
-    "pillow>=12.2.0",
-    "aiohttp>=3.13.4",
     "starlette>=1.0.1",
-    "lxml>=6.1.0",
-    "filelock>=3.20.3",
-    "marshmallow>=3.26.2",
+    "pillow>=12.2.0",
     "pygments>=2.20.0",
     "cryptography>=46.0.7",
-    "pydicom>=3.0.2",
     "pyasn1>=0.6.3",
-    "lxml-html-clean>=0.4.4",
     "python-multipart>=0.0.26",
-    "protobuf>=6.33.5",
-]
-
-[project.optional-dependencies]
-pyinstaller = ["pyinstaller>=6.14.0,<7"]
-jupyter = [
-    "jupyter>=1.1.1,<2",
-    "jupyter-core>=5.8.1",
-    "jupyterlab>=4.4.9",
-    "nbconvert>=7.17.1",
-]
-marimo = [
-    "cloudpathlib>=0.23.0,<1",
-    "ipython>=9.8.0,<10",
-    "marimo>=0.23.0,<1",
-    "matplotlib>=3.10.7,<4",
-    "shapely>=2.1.0,<3",
+    "tornado>=6.5.5",
+    "filelock>=3.20.3",
 ]
-qupath = []
 
 [project.scripts]
 aignostics-sdk = "aignostics_sdk.cli:cli"

packages/aignostics/pyproject.toml

@@ -76,7 +76,38 @@ requires-python = ">=3.11, <3.15"
 
 dependencies = [
     "aignostics-sdk==1.4.0",
-    # Heavy deps will be moved here from aignostics-sdk in Phase 5
+    # Heavy domain deps — WSI, DICOM, cloud storage, data processing
+    "boto3>=1.42.4,<2",
+    "crc32c>=2.8,<3",
+    "defusedxml>=0.7.1",
+    "dicom-validator>=0.7.3,<1",
+    "dicomweb-client[gcp]>=0.59.3,<1",
+    "duckdb>=1.4.2,<=2",
+    "fastparquet>=2026.3.0,<2026.4.0; python_version < '3.14'",
+    "google-cloud-storage>=3.6.0,<4",
+    "highdicom>=0.26.1,<1; python_version < '3.14'",
+    "html-sanitizer>=2.6.0,<3",
+    "humanize>=4.14.0,<5",
+    "idc-index-data==24.0.3",
+    "ijson>=3.4.0.post0,<4",
+    "openslide-bin>=4.0.0.10,<5",
+    "openslide-python>=1.4.3,<2",
+    "packaging>=26,<27",
+    "pandas>=2.3.3,<4",
+    "procrastinate>=3.5.3",
+    "pyarrow>=23.0.1,<24; python_version >= '3.14'",
+    "pydicom>=3.0.2",
+    "python-dateutil>=2.9.0.post0,<3",
+    "pyyaml>=6.0.3,<7",
+    "s5cmd>=0.3.3,<1",
+    "shapely>=2.1.2,<3",
+    "wsidicom>=0.28.1,<1",
+    # Transitive CVE overrides for heavy deps
+    "aiohttp>=3.13.4",
+    "lxml>=6.1.0",
+    "lxml-html-clean>=0.4.4",
+    "marshmallow>=3.26.2",
+    "protobuf>=6.33.5",
 ]
 
 [project.optional-dependencies]