Preparation

# Install "snakemake"
mamba create -n snakemake python snakemake
mamba activate snakemake

# Clone this repo
git clone https://github.com/TreesLab/circRNA_features.git

Prepare the reference files

cd circRNA_features/resources/
tar zxvf references.tar.gz

Run pipeline

snakemake --use-conda --configfile config/human.yaml --resources mem_mb=450000 IO_limit=4 -c 30