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1. WormLib WormLib Public

   Forked from erinosb/WormLib

   Modular image analysis toolkit to quantify Caenorhabditis elegans microscopy images. This toolkit can be used for smFISH spot detection (mRNA), fluorescence markers (proteins), colocalization (both…

   Python 2

2. WormLib-dev WormLib-dev Public

   This repository contains the active development code for WormLib, a pipeline for quantitative image analysis of C. elegans embryos. This repo tracks ongoing development, testing, and experimentatio…

   Jupyter Notebook 1 1

3. SPN4_maternal_mRNA SPN4_maternal_mRNA Public

   Forked from erinosb/SPN4_maternal_mRNA

   This repository accompanies the manuscript "The RNA-Binding Protein SPN-4 coordinates with CCR4-NOT to mediate mRNA clearance in early embryos" by Spike CA, Parker DM, Tsukamoto T, Torres N et al. …

   HTML

4. ERM1_TorresMangual ERM1_TorresMangual Public

   Forked from erinosb/ERM1_TorresMangual

   This repository accompanies the manuscript "erm-1 mRNA and ERM-1 protein co-translationally localize to the plasma membrane through a microtubule- and BMK-1-dependent pathway" by Torres-Mangual N, …

5. dv2png dv2png Public

   Repository to automatically download & visualize deltavision files stored in the Network-attached storage (NAS). Uses PySMB to access and transfer data between NAS and a local server (your computer…

   Python 1