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empty subSystems cause errors during model I/O

Status: Open.

#412 In SysBioChalmers/GECKO;

· edkerk opened on Jan 14, 2026

Testing version of bayesianSensitivityTuning

enhancement

Status: Open.

#409 In SysBioChalmers/GECKO;

· edkerk opened on Nov 19, 2025

flexibilizeEnzConcs incorrectly inverts protein pool LB

bug

Status: Open.

#408 In SysBioChalmers/GECKO;

· manas-kohli opened on Nov 19, 2025

DLKcat on Mac with Apple Silicon (arm64 architecture)

enhancement

Status: Open.

#393 In SysBioChalmers/GECKO;

· Mengzhensw opened on Oct 9, 2024

Bug detected: model.summary does not match expected phenotype for ecYeastGEM.xml for different carbon sources

bug

Status: Open.

#368 In SysBioChalmers/GECKO;

· Caseses100 opened on Mar 18, 2024

convert the manual tests to run with GH actions

Status: Open.

#269 In SysBioChalmers/GECKO;

· mihai-sysbio opened on Mar 6, 2023

feat: universal DLKcat.tsv for both light and full ecModels

enhancement

Status: Open.

#248 In SysBioChalmers/GECKO;

· Yu-sysbio opened on Feb 28, 2023

chore: consistent names and terminology

enhancement

Status: Open.

#229 In SysBioChalmers/GECKO;

· edkerk opened on Feb 22, 2023

refactor: update general kcat database

Status: Open.

#157 In SysBioChalmers/GECKO;

· edkerk opened on May 25, 2022

Check predicted growth rate by ecYeastGEM

bug

gecko1-2Issues related to GECKO version 1 and/or 2Issues related to GECKO version 1 and/or 2

Status: Open.

#131 In SysBioChalmers/GECKO;

· IVANDOMENZAIN opened on Feb 1, 2021

gecko.py: constrain_pool() not working with cobra 0.17.1 version

bug

gecko1-2Issues related to GECKO version 1 and/or 2Issues related to GECKO version 1 and/or 2

geckopy

Status: Open.

#94 In SysBioChalmers/GECKO;

· sousamd opened on Feb 3, 2020

feat: new EC main class 7 introduced in BRENDA

enhancement

question

Status: Open.

#79 In SysBioChalmers/GECKO;

· BenjaSanchez opened on Sep 2, 2019