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docs: add local bio connector installer#10

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yeqingmo wants to merge 1 commit into
SuperJJ007:mainfrom
yeqingmo:fix/local-bio-connectors
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docs: add local bio connector installer#10
yeqingmo wants to merge 1 commit into
SuperJJ007:mainfrom
yeqingmo:fix/local-bio-connectors

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@yeqingmo

@yeqingmo yeqingmo commented Jul 3, 2026

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Summary

  • add an idempotent scripts/install-local-bio-connectors.sh helper that registers local stdio replacements for PubMed, Clinical Trials, ChEMBL, and bioRxiv
  • attach the local *-local connectors to OPERON and detach the failing hosted bundled:* entries from that agent to avoid tool-routing failures
  • document why the Directory entries can still show Failed under virtual OAuth and how to verify the local connectors

Why

Under CSSwitch virtual OAuth, Anthropic-hosted HCLS connectors require a real claude.ai org/session and can show Failed. Claude Science already ships local bio-tools stdio servers for the same domains, so this gives users a repeatable local repair path instead of asking them to hand-add local MCP commands.

Validation

  • zsh -n scripts/install-local-bio-connectors.sh
  • scripts/install-local-bio-connectors.sh against a running CSSwitch sandbox
  • bash test/run_all.sh
  • cargo test in desktop/src-tauri

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