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Schapiro Lab

29 followers
Germany

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histoCAT histoCAT Public

Histology Topography Cytometry Analysis Toolbox

MATLAB 69 24
Background_subtraction Background_subtraction Public

Background subtraction for COMET platform

Python 13 6
micronuclAI micronuclAI Public

Automated identification of micronuclei for chromosomal instability (CIN) quantification.

Jupyter Notebook 12 3
macsima2mc macsima2mc Public

utitilies for macsima image sets

Python 10 5
spCellEval spCellEval Public

Repository for spCellEval (Benchmarking Cell Phenotyping Methods in Spatial Proteomics)

Jupyter Notebook 8 2
macsima_pipeline macsima_pipeline Public

Shell 8

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Showing 10 of 66 repositories

sysbio_course Public
GitHub Repo for the phenotyping part of the SysBio course in heidelberg

SchapiroLabor/sysbio_course’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jun 24, 2026
spCellEval Public
Repository for spCellEval (Benchmarking Cell Phenotyping Methods in Spatial Proteomics)

SchapiroLabor/spCellEval’s past year of commit activity

Jupyter Notebook 8 GPL-3.0 2 4 0 Updated Jun 11, 2026
molkart-local Public
Repository for local modules used in nf-core/molkart

SchapiroLabor/molkart-local’s past year of commit activity

Python 0 MIT 0 0 0 Updated Jun 9, 2026
spot2cell Public
Tool to assign FISH spots to their corresponding cell

SchapiroLabor/spot2cell’s past year of commit activity

Python 2 AGPL-3.0 0 0 0 Updated Jun 4, 2026
multiplexed-image-annotator Public Forked from sun-huangqingbo/multiplexed-image-annotator
Fork for benchmark

SchapiroLabor/multiplexed-image-annotator’s past year of commit activity

Python 0 2 0 0 Updated May 19, 2026
COZIpy Public
Python package for COZI neighbor preference analysis

SchapiroLabor/COZIpy’s past year of commit activity

Jupyter Notebook 5 MIT 1 0 0 Updated May 12, 2026
Background_subtraction Public
Background subtraction for COMET platform

SchapiroLabor/Background_subtraction’s past year of commit activity

Python 13 MIT 6 2 0 Updated May 12, 2026
mi_spatialomics Public
Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

SchapiroLabor/mi_spatialomics’s past year of commit activity

Jupyter Notebook 3 MIT 1 0 1 Updated May 11, 2026
micronuclAI_streamlit Public
This repository contains a streamlit app for CIN inferences based on the micronuclAI tool

SchapiroLabor/micronuclAI_streamlit’s past year of commit activity

Python 2 AGPL-3.0 0 2 0 Updated May 9, 2026
macsima2mc Public
utitilies for macsima image sets

SchapiroLabor/macsima2mc’s past year of commit activity

Python 10 BSD-3-Clause 5 3 0 Updated May 6, 2026

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