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egrep is deprecated, use grep -E instead #255

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Merged
danielhollas merged 1 commit into from
Jul 6, 2026
Merged

egrep is deprecated, use grep -E instead #255

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2 changes: 1 addition & 1 deletion tests/REMD/test.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,7 @@ else
MPIRUN="$MPI_PATH/bin/mpirun"
fi

N_REPLICAS=$(egrep --only-matching 'nreplica\s*=\s*[0-9]' $ABININ | egrep -o [0-9])
N_REPLICAS=$(grep -E --only-matching 'nreplica\s*=\s*[0-9]' $ABININ | grep -E -o [0-9])

$MPIRUN -np $N_REPLICAS $ABINEXE -i $ABININ -v $ABINVEL > $ABINOUT
$MPIRUN -np $N_REPLICAS $ABINEXE -i ${ABININ}2 > ${ABINOUT}2
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2 changes: 1 addition & 1 deletion tests/TERAPI-FAILS/test3.sh
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Expand Up @@ -18,7 +18,7 @@ IDX=3
ABININ=input.in$IDX
ABINOUT=${ABINOUT}$IDX
TCOUT=${TCOUT}$IDX
N_TERA_SERVERS=$(egrep --only-matching 'nteraservers\s*=\s*[0-9]' $ABININ | egrep -o [0-9])
N_TERA_SERVERS=$(grep -E --only-matching 'nteraservers\s*=\s*[0-9]' $ABININ | grep -E -o [0-9])

MPIRUN="$MPIRUN -n 1"
ABIN_CMD="$ABINEXE -i $ABININ -x $ABINGEOM"
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2 changes: 1 addition & 1 deletion tests/TERAPI-PIMD-PARALLEL/test.sh
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Expand Up @@ -11,7 +11,7 @@ if ! clean_output_files $1; then
exit 0
fi

N_TERA_SERVERS=$(egrep --only-matching 'nteraservers\s*=\s*[0-9]' $ABININ | egrep -o [0-9])
N_TERA_SERVERS=$(grep -E --only-matching 'nteraservers\s*=\s*[0-9]' $ABININ | grep -E -o [0-9])

# Exit early for OpenMPI build.
check_for_openmpi
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2 changes: 1 addition & 1 deletion tests/TERAPI-PIMD/test.sh
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Expand Up @@ -11,7 +11,7 @@ if ! clean_output_files $1; then
exit 0
fi

N_TERA_SERVERS=$(egrep --only-matching 'nteraservers\s*=\s*[0-9]' $ABININ | egrep -o [0-9])
N_TERA_SERVERS=$(grep -E --only-matching 'nteraservers\s*=\s*[0-9]' $ABININ | grep -E -o [0-9])

# Exit early for OpenMPI build.
check_for_openmpi
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2 changes: 1 addition & 1 deletion tests/TERAPI-REMD/test.sh
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Expand Up @@ -16,7 +16,7 @@ if ! clean_output_files $1; then
exit 0
fi

N_TERA_SERVERS=$(egrep --only-matching 'nreplica\s*=\s*[0-9]' $ABININ | egrep -o [0-9])
N_TERA_SERVERS=$(grep -E --only-matching 'nreplica\s*=\s*[0-9]' $ABININ | grep -E -o [0-9])

# Exit early for OpenMPI build.
check_for_openmpi
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4 changes: 2 additions & 2 deletions tests/test_tc_server_utils.sh
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Expand Up @@ -136,13 +136,13 @@ check_running_processes() {
MAX_ITER=100
iter=1
while true;do
running=$(ps -eo pid | egrep "$regex" | wc -l)
running=$(ps -eo pid | grep -E "$regex" | wc -l)
if [[ $running -eq 0 ]];then
break
elif [[ $running -lt $num_jobs ]];then
# Give the others time to finish
sleep 1.2
running=$(ps -eo pid | egrep "$regex" | wc -l)
running=$(ps -eo pid | grep -E "$regex" | wc -l)
if [[ $running -ne 0 ]];then
echo "One of the TC servers or ABIN died. Killing the rest."
#echo "Printing ABIN and TC server outputs for debugging."
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