Biaflows / Neubias-WG5
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W_NucleiSegmentation3D-ImageJ
W_NucleiSegmentation3D-ImageJ Public templateBIAFLOWS workflow to segment clustered nuclei using a 3D filter, thresholding and a 3D binary watershed.
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W_NucleiSegmentation-CellProfiler
W_NucleiSegmentation-CellProfiler Public templateNEUBIAS-WG5 workflow for nuclei segmentation using CellProfiler 2.2.0
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W_NucleiSegmentation-UNet
W_NucleiSegmentation-UNet Public template3-class U-Net segmentation.
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W_NeuronTracing_vaa3d_fastmarching_spanningtree
W_NeuronTracing_vaa3d_fastmarching_spanningtree Public templateTrace 3d neuron with vaa3d BJUT Fast Marching Spanning Tree algorithm
Python 2
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W_SpotDetection-Icy
W_SpotDetection-Icy PublicNeubias-WG5 workflow for SpotDetection using Icy
Repositories
- W_NucleiSegmentation-Cellpose Public template
- W_NucleiSegmentation3D-ImageJ Public template
BIAFLOWS workflow to segment clustered nuclei using a 3D filter, thresholding and a 3D binary watershed.
- neubias-wg5.github.io Public
- W_ObjectTracking-MU-Lux-CZ Public template
- W_NucleiTracking-ImageJ Public template
BIAFLOWS workflow to track nuclei in a time series. The tracking uses a 3D-object segmentation with watershed to track the nuclei.
- W_LandmarkDetect-ML-MSET-Pred Public template
- W_NucleiSegmentation3D-ilastik Public template
BIAFLOWS workflow for 3D nuclei segmentation in ilastik.
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